# Identification of candidate causal perturbations from differential gene expression data

## Documentation for package ‘cTRAP’ version 1.0.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

cTRAP-package | cTRAP package
compareAgainstL1000 | Compare against L1000 datasets
cTRAP | cTRAP package
downloadENCODEknockdownMetadata | Download metadata for ENCODE knockdown experiments
downloadENCODEsamples | Download ENCODE samples
downloadL1000data | Download L1000 data
filterL1000metadata | Filter L1000 metadata
getL1000conditions | List available conditions in L1000 datasets
getL1000perturbationTypes | Get perturbation types
loadL1000perturbations | Load L1000 perturbation data
performDifferentialExpression | Perform differential gene expression based on ENCODE data
plotL1000comparison | Plot L1000 data comparison
prepareENCODEgeneExpression | Load an ENCODE gene expression data