# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Thu May 14 12:01:15 2020
# ------------------------------------------------

package:
    name: bioconductor-crossmeta
    version: 1.14.0
source:
    md5: 1cb44044a3353da4228b4017a6628ce6
    url:
        - https://bioarchive.galaxyproject.org/crossmeta_1.14.0.tar.gz
        - https://bioconductor.org/packages/3.11/bioc/src/contrib/crossmeta_1.14.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-crossmeta/bioconductor-crossmeta_1.14.0_src_all.tar.gz
build:
    noarch: generic
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r40_0
requirements:
    host:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 1_llvm
        - _r-mutex 1.0.1 anacondar_1
        - _r-xgboost-mutex 2.0 cpu_0
        - binutils_impl_linux-64 2.34 h53a641e_0
        - binutils_linux-64 2.34 hc952b39_18
        - bioconductor-affxparser 1.60.0 r40h5f743cb_0
        - bioconductor-affy 1.66.0 r40h037d062_0
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        - bioconductor-annotate 1.66.0 r40_0
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        - bioconductor-genefilter 1.70.0 r40hc6cf775_0
        - bioconductor-genomeinfodb 1.24.0 r40_0
        - bioconductor-genomeinfodbdata 1.2.3 r40_0
        - bioconductor-genomicranges 1.40.0 r40h037d062_0
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        - bioconductor-xvector 0.28.0 r40h037d062_0
        - bioconductor-zlibbioc 1.34.0 r40h037d062_0
        - bwidget 1.9.14 0
        - bzip2 1.0.8 h516909a_2
        - ca-certificates 2020.4.5.1 hecc5488_0
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        - libcblas 3.8.0 16_openblas
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        - python 3.8.2 he5300dc_7_cpython
        - python_abi 3.8 1_cp38
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        - r-assertive.files 0.0_2 r40h6115d3f_1003
        - r-assertive.matrices 0.0_2 r40h6115d3f_2
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        - r-assertive.properties 0.0_4 r40h6115d3f_1003
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        - r-assertive.sets 0.0_3 r40h6115d3f_1003
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        - r-assertive.types 0.0_3 r40h6115d3f_1004
        - r-assertthat 0.2.1 r40h6115d3f_2
        - r-backports 1.1.7 r40hcdcec82_0
        - r-base 4.0.0 hdca8982_3
        - r-base64enc 0.1_3 r40hcdcec82_1004
        - r-bh 1.72.0_3 r40h6115d3f_1
        - r-bibtex 0.4.2.2 r40hcdcec82_1
        - r-biocmanager 1.30.10 r40h6115d3f_1
        - r-bit 1.1_15.2 r40hcdcec82_1
        - r-bit64 0.9_7 r40hcdcec82_1002
        - r-bitops 1.0_6 r40hcdcec82_1004
        - r-blob 1.2.1 r40h6115d3f_1
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        - r-cli 2.0.2 r40h6115d3f_1
        - r-clipr 0.7.0 r40h6115d3f_1
        - r-codetools 0.2_16 r40h6115d3f_1002
        - r-colorspace 1.4_1 r40hcdcec82_2
        - r-crayon 1.3.4 r40h6115d3f_1003
        - r-crosstalk 1.1.0.1 r40h6115d3f_1
        - r-curl 4.3 r40hcdcec82_1
        - r-data.table 1.12.8 r40hcdcec82_1
        - r-dbi 1.1.0 r40h6115d3f_1
        - r-desc 1.2.0 r40h6115d3f_1003
        - r-digest 0.6.25 r40h0357c0b_2
        - r-doparallel 1.0.15 r40h6115d3f_1
        - r-dorng 1.8.2 r40h6115d3f_1
        - r-dplyr 0.8.5 r40h0357c0b_1
        - r-dt 0.13 r40h6115d3f_1
        - r-ellipsis 0.3.0 r40hcdcec82_1
        - r-evaluate 0.14 r40h6115d3f_2
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        - r-fastmap 1.0.1 r40h0357c0b_1
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        - r-ff 2.2_14.2 r40he1b5a44_1
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        - r-formatr 1.7 r40h6115d3f_2
        - r-futile.logger 1.4.3 r40h6115d3f_1003
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        - r-gbrd 0.4_11 r40h6115d3f_1002
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        - r-httr 1.4.1 r40h6115d3f_2
        - r-isoband 0.2.1 r40h0357c0b_1
        - r-iterators 1.0.12 r40h6115d3f_1
        - r-jsonlite 1.6.1 r40hcdcec82_1
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        - r-labeling 0.3 r40h6115d3f_1003
        - r-lambda.r 1.2.4 r40h6115d3f_1
        - r-later 1.0.0 r40h0357c0b_1
        - r-lattice 0.20_41 r40hcdcec82_2
        - r-lazyeval 0.2.2 r40hcdcec82_2
        - r-lifecycle 0.2.0 r40h6115d3f_1
        - r-locfit 1.5_9.4 r40hcdcec82_1
        - r-lsa 0.73.2 r40_1
        - r-magrittr 1.5 r40h6115d3f_1003
        - r-markdown 1.1 r40hcdcec82_1
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        - r-matrix 1.2_18 r40h7fa42b6_3
        - r-matrixstats 0.56.0 r40hcdcec82_1
        - r-memoise 1.1.0 r40h6115d3f_1004
        - r-metama 3.1.2 r40h6115d3f_5
        - r-metap 1.1 r40h6115d3f_2
        - r-mgcv 1.8_31 r40h7fa42b6_1
        - r-mime 0.9 r40hcdcec82_1
        - r-miniui 0.1.1.1 r40h6115d3f_1002
        - r-munsell 0.5.0 r40h6115d3f_1003
        - r-ncmisc 1.1.6 r40h6115d3f_1
        - r-nlme 3.1_147 r40h9bbef5b_1
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        - r-pillar 1.4.4 r40h6115d3f_0
        - r-pkgbuild 1.0.8 r40h6115d3f_0
        - r-pkgconfig 2.0.3 r40h6115d3f_1
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        - r-pkgmaker 0.31.1 r40h6115d3f_1
        - r-plogr 0.2.0 r40h6115d3f_1003
        - r-plotly 4.9.2.1 r40h6115d3f_1
        - r-plyr 1.8.6 r40h0357c0b_1
        - r-praise 1.0.0 r40h6115d3f_1004
        - r-prettyunits 1.1.1 r40h6115d3f_1
        - r-processx 3.4.2 r40hcdcec82_1
        - r-proftools 0.99_2 r40h6115d3f_1
        - r-promises 1.1.0 r40h0357c0b_1
        - r-ps 1.3.3 r40hcdcec82_0
        - r-purrr 0.3.4 r40hcdcec82_1
        - r-r6 2.4.1 r40h6115d3f_1
        - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
        - r-rcpp 1.0.4.6 r40h0357c0b_1
        - r-rcurl 1.98_1.2 r40hcdcec82_1
        - r-rdpack 0.11_1 r40h6115d3f_1
        - r-rdrop2 0.8.1 r40h6115d3f_1003
        - r-reader 1.0.6 r40h6115d3f_1
        - r-readr 1.3.1 r40h0357c0b_1004
        - r-registry 0.5_1 r40h6115d3f_2
        - r-reshape 0.8.8 r40hcdcec82_2
        - r-rlang 0.4.6 r40hcdcec82_0
        - r-rngtools 1.5 r40h6115d3f_1
        - r-rprojroot 1.3_2 r40h6115d3f_1003
        - r-rsqlite 2.2.0 r40h0357c0b_2
        - r-rstudioapi 0.11 r40h6115d3f_1
        - r-scales 1.1.1 r40h6115d3f_0
        - r-shiny 1.4.0.2 r40h6115d3f_1
        - r-smvar 1.3.3 r40_1003
        - r-snow 0.4_3 r40h6115d3f_1002
        - r-snowballc 0.7.0 r40hcdcec82_1
        - r-sourcetools 0.1.7 r40he1b5a44_1002
        - r-stringi 1.4.6 r40h0e574ca_2
        - r-stringr 1.4.0 r40h6115d3f_2
        - r-survival 3.1_12 r40hcdcec82_1
        - r-sys 3.3 r40hcdcec82_1
        - r-testthat 2.3.2 r40h0357c0b_1
        - r-tibble 3.0.1 r40hcdcec82_1
        - r-tidyr 1.0.3 r40h0357c0b_0
        - r-tidyselect 1.1.0 r40h6115d3f_0
        - r-utf8 1.1.4 r40hcdcec82_1003
        - r-vctrs 0.3.0 r40hcdcec82_0
        - r-viridislite 0.3.0 r40h6115d3f_1003
        - r-withr 2.2.0 r40h6115d3f_1
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        - r-xml 3.99_0.3 r40hcdcec82_1
        - r-xml2 1.3.2 r40h0357c0b_1
        - r-xtable 1.8_4 r40h6115d3f_3
        - r-yaml 2.2.1 r40hcdcec82_1
        - r-zeallot 0.1.0 r40h6115d3f_1002
        - readline 8.0 hf8c457e_0
        - sed 4.7 h1bed415_1000
        - setuptools 46.3.0 py38h32f6830_0
        - sqlite 3.30.1 hcee41ef_0
        - tk 8.6.10 hed695b0_0
        - tktable 2.10 h555a92e_3
        - wheel 0.34.2 py_1
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.9 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.5 h516909a_0
        - zlib 1.2.11 h516909a_1006
        - zstd 1.4.4 h6597ccf_3
    run:
        - bioconductor-affxparser >=1.60.0,<1.61.0
        - bioconductor-affy >=1.66.0,<1.67.0
        - bioconductor-annotationdbi >=1.50.0,<1.51.0
        - bioconductor-biobase >=2.48.0,<2.49.0
        - bioconductor-biocgenerics >=0.34.0,<0.35.0
        - bioconductor-ccmap >=1.14.0,<1.15.0
        - bioconductor-geoquery >=2.56.0,<2.57.0
        - bioconductor-limma >=3.44.0,<3.45.0
        - bioconductor-oligo >=1.52.0,<1.53.0
        - bioconductor-sva >=3.36.0,<3.37.0
        - r-base >=4.0,<4.1.0a0
        - r-biocmanager >=1.30.4
        - r-data.table >=1.10.4
        - r-dbi >=1.0.0
        - r-doparallel >=1.0.10
        - r-dorng >=1.6
        - r-dt >=0.2
        - r-fdrtool >=1.2.15
        - r-foreach >=1.4.3
        - r-ggplot2 >=2.2.1
        - r-matrixstats >=0.51.0
        - r-metama >=3.1.2
        - r-metap >=0.8
        - r-miniui >=0.1.1
        - r-plotly >=4.5.6
        - r-rcolorbrewer >=1.1.2
        - r-rcurl >=1.95.4.11
        - r-rdrop2 >=0.7.0
        - r-reader >=1.0.6
        - r-reshape >=0.8.6
        - r-rsqlite >=2.1.1
        - r-shiny >=1.0.0
        - r-stringr >=1.2.0
        - r-xml >=3.98.1.17
test:
    commands:
        - $R -e "library('crossmeta')"
about:
    description: Implements cross-platform and cross-species meta-analyses of Affymentrix,
        Illumina, and Agilent microarray data. This package automates common tasks
        such as downloading, normalizing, and annotating raw GEO data. The user then
        selects control and treatment samples in order to perform differential expression/pathway
        analyses for all comparisons. After analysing each contrast seperately, the
        user can select tissue sources for each contrast and specify any tissue sources
        that should be grouped for the subsequent meta-analyses. Finally, effect size
        and pathway meta-analyses can proceed and the results graphically explored.
    home: https://bioconductor.org/packages/3.11/bioc/html/crossmeta.html
    license: MIT + file LICENSE
    license_file: LICENSE
    summary: Cross Platform Meta-Analysis of Microarray Data
extra:
    copy_test_source_files: true
    final: true
