# COexpression Tables ANalysis

## Documentation for package ‘COTAN’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

add.row.to.meta | add.row.to.meta
add.row.to.meta-method | add.row.to.meta
automatic.COTAN.object.creation | automatic.COTAN.object.creation
automatic.COTAN.object.creation-method | automatic.COTAN.object.creation
clean | clean
clean-method | clean
cotan_analysis | cotan_analysis
cotan_analysis-method | cotan_analysis
drop.genes.cells | drop.genes.cells
drop.genes.cells-method | drop.genes.cells
ERCC.cotan | COTAN object
ERCCraw | Raw ERCC dataset
est.min.parameters | est.min.parameters
est.min.parameters-method | est.min.parameters
extract.coex | extract.coex
extract.coex-method | extract.coex
fun_linear | fun_linear
get.a | get.a
get.a-method | get.a
get.cell.number | get.cell.number
get.cell.number-method | get.cell.number
get.cell.size | get.cell.size
get.cell.size-method | get.cell.size
get.coex | get.coex
get.coex-method | get.coex
get.constitutive.genes | get.constitutive.genes This function return the genes expressed in all cells in the dataset.
get.constitutive.genes-method | get.constitutive.genes This function return the genes expressed in all cells in the dataset.
get.expected.ct | get.expected.ct
get.expected.ct-method | get.expected.ct
get.GDI | get.GDI
get.GDI-method | get.GDI
get.gene.coexpression.space | get.gene.coexpression.space
get.gene.coexpression.space-method | get.gene.coexpression.space
get.genes | get.genes
get.genes-method | get.genes
get.lambda | get.lambda
get.lambda-method | get.lambda
get.metadata | get.metadata
get.metadata-method | get.metadata
get.normdata | get.normdata
get.normdata-method | get.normdata
get.nu | get.nu
get.nu-method | get.nu
get.observed.ct | get.observed.ct
get.observed.ct-method | get.observed.ct
get.pval | get.pval
get.pval-method | get.pval
get.rawdata | get.rawdata
get.rawdata-method | get.rawdata
get.subset | get.subset
get.subset-method | get.subset
initRaw | initRaw
initRaw-method | initRaw
mat2vec_rfast | mat2vec_rfast
mat2vec_rfast-method | mat2vec_rfast
plot_GDI | plot_GDI
plot_GDI-method | plot_GDI
plot_general.heatmap | plot_general.heatmap
plot_general.heatmap-method | plot_general.heatmap
plot_heatmap | plot_heatmap
plot_heatmap-method | plot_heatmap
raw.dataset | Raw sample dataset
scCOTAN | scCOTAN-class
scCOTAN-class | scCOTAN-class
vec2mat_rfast | vec2mat_rfast
vec2mat_rfast-method | vec2mat_rfast