Package: coseq
Type: Package
Title: Co-Expression Analysis of Sequencing Data
Version: 1.16.0
Date: 2020-12-17
Authors@R: c(
  person(given="Andrea", 
         family="Rau", 
         email="andrea.rau@inrae.fr", 
         role=c("cre", "aut"), 
         comment = c(ORCID = "0000-0001-6469-488X")),
  person(given="Cathy",
         family="Maugis-Rabusseau",
         role="ctb"),
  person(given="Antoine",
         family="Godichon-Baggioni",
         role="ctb"))
Depends: R (>= 4.0.0), SummarizedExperiment, S4Vectors
Imports: edgeR, DESeq2, capushe, Rmixmod, e1071, BiocParallel, ggplot2,
        scales, HTSFilter, corrplot, HTSCluster, grDevices, graphics,
        stats, methods, compositions, mvtnorm
Suggests: Biobase, knitr, rmarkdown, testthat, BiocStyle
Description: Co-expression analysis for expression profiles arising from
        high-throughput sequencing data. Feature (e.g., gene) profiles 
		are clustered using adapted transformations and mixture models or 
		a K-means algorithm, and model selection criteria
        (to choose an appropriate number of clusters) are provided.
biocViews: GeneExpression, RNASeq, Sequencing, Software, ImmunoOncology
License: GPL-3
LazyLoad: yes
Encoding: UTF-8
RoxygenNote: 7.1.1
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/coseq
git_branch: RELEASE_3_13
git_last_commit: e1d4441
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-19 21:28:58 UTC; biocbuild
Author: Andrea Rau [cre, aut] (<https://orcid.org/0000-0001-6469-488X>),
  Cathy Maugis-Rabusseau [ctb],
  Antoine Godichon-Baggioni [ctb]
Maintainer: Andrea Rau <andrea.rau@inrae.fr>
Built: R 4.1.0; ; 2021-06-04 16:31:54 UTC; unix
