$,LongTable-method	cash-LongTable-method
$<-,LongTable-method	cash-set-LongTable-method
.	dot-
.convertCSetMolecularProfilesToSE	dot-convertCSetMolecularProfilesToSE
.CoreSet	CoreSet-class
.DataMapper	DataMapper-class
.distancePointLine	dot-distancePointLine
.distancePointSegment	dot-distancePointSegment
.intersectList	dot-intersectList
.LongTable	LongTable-class
.LongTableDataMapper	LongTableDataMapper-class
.sensitivityToLongTable	dot-sensitivityToLongTable
.symSetDiffList	dot-symSetDiffList
.unionList	dot-unionList
amcc	amcc
annotation	CoreSet-accessors
annotation,CoreSet-method	CoreSet-accessors
annotation<-	CoreSet-accessors
annotation<-,CoreSet,list-method	CoreSet-accessors
as	as
as.data.frame.LongTable	as.data.frame.LongTable
as.data.table.LongTable	as.data.table.LongTable
as.long.table	as.long.table
assay,LongTable,ANY-method	LongTable-class
assay<-,LongTable,character-method	LongTable-class
assayCols	assayCols
assayCols,LongTable-method	LongTable-class
assayMap	LongTableDataMapper-accessors
assayMap,LongTableDataMapper,List-method	LongTableDataMapper-accessors
assayMap,LongTableDataMapper,list-method	LongTableDataMapper-accessors
assayMap,LongTableDataMapper-method	LongTableDataMapper-accessors
assayMap<-	LongTableDataMapper-accessors
assayMap<-,LongTableDataMapper,List-methhod	LongTableDataMapper-accessors
assayMap<-,LongTableDataMapper,list-method	LongTableDataMapper-accessors
assayMap<-,LongTableDataMapper,list_or_List-method	LongTableDataMapper-accessors
assayNames,LongTable-method	LongTable-class
assays,LongTable-method	LongTable-class
assays<-,LongTable,list-method	LongTable-class
buildLongTable	buildLongTable
buildLongTable,character-method	LongTable-class
buildLongTable,data.frame-method	LongTable-class
buildLongTable,list-method	Create
callingWaterfall	callingWaterfall
cardinality	checkColumnCardinality
cellInfo	CoreSet-accessors
cellInfo,CoreSet-method	CoreSet-accessors
cellInfo<-	CoreSet-accessors
cellInfo<-,CoreSet,data.frame-method	CoreSet-accessors
cellName,CoreSet-method	CoreSet-accessors
cellNames	CoreSet-accessors
cellNames,CoreSet-method	CoreSet-accessors
cellNames<-	CoreSet-accessors
cellNames<-,CoreSet,character-method	CoreSet-accessors
cellNames<-,CoreSet,list-method	CoreSet-accessors
checkColumnCardinality	checkColumnCardinality
checkCsetStructure	checkCsetStructure
clevelandSmall_cSet	clevelandSmall_cSet
colData,LongTable-method	LongTable-class
colData<-,LongTable,ANY-method	LongTable-class
colDataMap	LongTableDataMapper-accessors
colDataMap,LongTableDataMapper-method	LongTableDataMapper-accessors
colDataMap<-	LongTableDataMapper-accessors
colDataMap<-,LongTableDataMapper,list_or_List-method	LongTableDataMapper-accessors
colDataMap<-LongTableDataMapper,List-method	LongTableDataMapper-accessors
colIDs	colIDs
colIDs,LongTable-method	LongTable-class
colMeta	colMeta
colMeta,LongTable-method	LongTable-class
colnames,LongTable-method	LongTable-class
connectivityScore	connectivityScore
CoreSet	CoreSet
CoreSet-accessors	CoreSet-accessors
CoreSet-class	CoreSet-class
cosinePerm	cosinePerm
curation	CoreSet-accessors
curation,CoreSet-method	CoreSet-accessors
curation<-	CoreSet-accessors
curation<-,CoreSet,list-method	CoreSet-accessors
DataMapper-accessors	DataMapper-accessors
DataMapper-class	DataMapper-class
datasetType	CoreSet-accessors
datasetType,CoreSet-method	CoreSet-accessors
datasetType<-	CoreSet-accessors
datasetType<-,CoreSet,character-method	CoreSet-accessors
dateCreated	CoreSet-accessors
dateCreated,CoreSet-method	CoreSet-accessors
dateCreated<-	CoreSet-accessors
dateCreated<-,CoreSet,character-method	CoreSet-accessors
dateCreated<-,CoreSet-method	CoreSet-accessors
dim,LongTable-method	LongTable-class
dimnames,LongTable-method	LongTable-class
drugSensitivitySig	drugSensitivitySig
exampleDataMapper	exampleDataMapper
featureInfo	CoreSet-accessors
featureInfo,CoreSet-method	CoreSet-accessors
featureInfo<-	CoreSet-accessors
featureInfo<-,CoreSet,character,data.frame-method	CoreSet-accessors
featureInfo<-,CoreSet,character,DataFrame-method	CoreSet-accessors
fNames	CoreSet-accessors
fNames,CoreSet,character-method	CoreSet-accessors
fNames<-	CoreSet-accessors
fNames<-,CoreSet,character,character-method	CoreSet-accessors
getIntern	getIntern
getIntern,LongTable,character-method	LongTable-class
guessMapping	guessMapping
guessMapping,LongTableDataMapper-method	guessMapping-LongTableDataMapper-method
gwc	gwc
idCols	idCols
idCols,LongTable-method	idCols-LongTable-method
is.items	is.items
lapply,MultiAssayExperiment-method	lapply-MultiAssayExperiment-method
list_or_LongTable-class	list_or_LongTable-class
LongTable	LongTable
LongTable-class	LongTable-class
LongTableDataMapper	LongTableDataMapper
LongTableDataMapper-accessors	LongTableDataMapper-accessors
LongTableDataMapper-class	LongTableDataMapper-class
mcc	mcc
mDataNames	CoreSet-accessors
mDataNames,CoreSet-method	CoreSet-accessors
mDataNames<-	CoreSet-accessors
mDataNames<-,CoreSet,ANY-method	CoreSet-accessors
mDataNames<-,CoreSet-method	CoreSet-accessors
merckLongTable	merckLongTable
metaConstruct	metaConstruct
metaConstruct,LongTableDataMapper-method	metaConstruct
metadata,LongTable-method	metadata-LongTable-method
metadata<-,LongTable-method	metadata-set-LongTable-method
metadataMap	LongTableDataMapper-accessors
metadataMap,LongTableDataMapper-method	LongTableDataMapper-accessors
metadataMap<-	LongTableDataMapper-accessors
metadataMap<-,LongTableDataMapper,list_or_List-method	LongTableDataMapper-accessors
metadataMap<-,LongTableDataMapper-method	LongTableDataMapper-accessors
molecularProfiles	CoreSet-accessors
molecularProfiles,CoreSet-method	CoreSet-accessors
molecularProfiles<-	CoreSet-accessors
molecularProfiles<-,CoreSet,character,character,matrix-method	CoreSet-accessors
molecularProfiles<-,CoreSet,character,missing,matrix-method	CoreSet-accessors
molecularProfilesSlot	CoreSet-accessors
molecularProfilesSlot,CoreSet-method	CoreSet-accessors
molecularProfilesSlot<-	CoreSet-accessors
molecularProfilesSlot<-,CoreSet,list-method	CoreSet-accessors
molecularProfilesSlot<-,CoreSet,list_or_MAE-method	CoreSet-accessors
molecularProfilesSlot<-CoreSet,MultiAssayExperiment-method	CoreSet-accessors
moleculerProfilesSlot,CoreSet-method	CoreSet-accessors
name	CoreSet-accessors
name,CoreSet-method	CoreSet-accessors
name<-	CoreSet-accessors
name<-,CoreSet,character-method	CoreSet-accessors
name<-,CoreSet-method	CoreSet-accessors
pertNumber	CoreSet-accessors
pertNumber,CoreSet-method	CoreSet-accessors
pertNumber<-	CoreSet-accessors
pertNumber<-,CoreSet,array-method	CoreSet-accessors
phenoInfo	CoreSet-accessors
phenoInfo,CoreSet,character-method	CoreSet-accessors
phenoInfo<-	CoreSet-accessors
phenoInfo<-,CoreSet,character,data.frame-method	CoreSet-accessors
phenoInfo<-,CoreSet,character,DataFrame-method	CoreSet-accessors
rawdata	DataMapper-accessors
rawdata,DataMapper-method	DataMapper-accessors
rawdata,LongTableDataMapper-method	LongTableDataMapper-accessors
reindex	reindex
reindex,LongTable-method	reindex-LongTable-method
rowData,LongTable-method	LongTable-class
rowData<-,LongTable-method	LongTable-class
rowDataMap	LongTableDataMapper-accessors
rowDataMap,LongTableDataMapper-method	LongTableDataMapper-accessors
rowDataMap<-	LongTableDataMapper-accessors
rowDataMap<-,LongTableDataMapper,list-method	LongTableDataMapper-accessors
rowDataMap<-,LongTableDataMapper,list_or_List-method	LongTableDataMapper-accessors
rowDataMap<-LongTableDataMapper,List-method	LongTableDataMapper-accessors
rowIDs	rowIDs
rowIDs,LongTable-method	LongTable-class
rowMeta	rowMeta
rowMeta,LongTable-method	LongTable-class
rownames,LongTable-method	LongTable-class
sensitivityInfo	sensitivityInfo
sensitivityInfo,CoreSet,character-method	CoreSet-accessors
sensitivityInfo,CoreSet,missing-method	CoreSet-accessors
sensitivityInfo,CoreSet-method	CoreSet-accessors
sensitivityInfo<-	sensitivityInfo-set
sensitivityInfo<-,CoreSet,data.frame-method	CoreSet-accessors
sensitivityInfo<-,CoreSet,missing,data.frame-method	CoreSet-accessors
sensitivityMeasures	sensitivityMeasures
sensitivityMeasures,CoreSet-method	CoreSet-accessors
sensitivityMeasures<-	sensitivityMeasures-set
sensitivityMeasures<-,CoreSet,character-method	CoreSet-accessors
sensitivityProfiles	sensitivityProfiles
sensitivityProfiles,CoreSet-method	CoreSet-accessors
sensitivityProfiles<-	sensitivityProfiles-set
sensitivityProfiles<-,CoreSet,data.frame-method	CoreSet-accessors
sensitivityRaw	sensitivityRaw
sensitivityRaw,CoreSet-method	CoreSet-accessors
sensitivityRaw<-	sensitivityRaw-set
sensitivityRaw<-,CoreSet,array-method	CoreSet-accessors
sensitivitySlot	CoreSet-accessors
sensitivitySlot,CoreSet-method	CoreSet-accessors
sensitivitySlot<-	CoreSet-accessors
sensitivitySlot<-,CoreSet,list-method	CoreSet-accessors
sensitivitySlot<-,CoreSet,list_or_LongTable-method	CoreSet-accessors
sensitivitySlot<-,CoreSet,LongTable-method	CoreSet-accessors
sensitivitySlotToLongTable	sensitivitySlotToLongTable
sensitvityInfo<-,CoreSet,character,data.frame-method	CoreSet-accessors
sensNumber	CoreSet-accessors
sensNumber,CoreSet-method	CoreSet-accessors
sensNumber<-	CoreSet-accessors
sensNumber<-,CoreSet,matrix-method	CoreSet-accessors
show,CoreSet-method	show-CoreSet-method
show,LongTable-method	show-LongTable-method
show,LongTableDataMapper-method	LongTableDataMapper-class
showSigAnnot	showSigAnnot
subset,LongTable-method	subset-LongTable-method
subsetTo	subsetTo
summarizeMolecularProfiles	summarizeMolecularProfiles
summarizeSensitivityProfiles	summarizeSensitivityProfiles
updateCellId	updateCellId
[,LongTable,ANY,ANY,ANY-method	sub-LongTable-ANY-ANY-ANY-method
[[,LongTable,ANY,ANY-method	LongTable-class
[[<-,LongTable,ANY,ANY-method	sub-subset-LongTable-ANY-ANY-method
