Package: concordexR
Title: Calculate the concordex coefficient
Version: 1.0.0
Authors@R: c(
    person("Kayla","Jackson", , "kaylajac@caltech.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-6483-0108")),
    person("A. Sina", "Booeshaghi", , "alisina@caltech.edu", role = "aut",
           comment = c(ORCID = "0000-0002-6442-4502")),
    person("Angel", "Galvez-Merchan", , "agalvezm@caltech.edu", role = "aut",
           comment = c(ORCID = "0000-0001-7420-8697")),
    person("Lambda", "Moses", , "dlu2@caltech.edu", role = "aut",
           comment = c(ORCID = "0000-0002-7092-9427")),
    person("Laura", "Luebbert", , "lauraluebbert@caltech.edu", role = "ctb",
           comment = c(ORCID = "0000-0003-1379-2927")),
    person("Lior", "Pachter", , "lpachter@caltech.edu", role = c("aut", "rev", "ths"),
           comment = c(ORCID = "0000-0002-9164-6231"))
  )
Description: Many analysis workflows include approximation of a nearest
    neighbors graph followed by clustering of the graph structure. The
    concordex coefficient estimates the concordance between the graph and
    clustering results. The package 'concordexR' is an R implementation of the
    original concordex Python-based command line tool.
License: Artistic-2.0
URL: https://github.com/pachterlab/concordexR,
        https://pachterlab.github.io/concordexR/
BugReports: https://github.com/pachterlab/concordexR/issues
Imports: BiocParallel, cli, DelayedArray, ggplot2, Matrix, methods,
        pheatmap, rlang, scales
Suggests: BiocNeighbors, BiocStyle, bluster, covr, knitr, patchwork,
        rmarkdown, scater, TENxPBMCData, testthat (>= 3.0.0), vdiffr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: R (>= 4.2)
Config/testthat/edition: 3
biocViews: SingleCell, Clustering, GraphAndNetwork
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/concordexR
git_branch: RELEASE_3_17
git_last_commit: 600425d
git_last_commit_date: 2023-04-25
Date/Publication: 2023-04-25
NeedsCompilation: no
Packaged: 2023-04-25 20:41:22 UTC; biocbuild
Author: Kayla Jackson [aut, cre] (<https://orcid.org/0000-0001-6483-0108>),
  A. Sina Booeshaghi [aut] (<https://orcid.org/0000-0002-6442-4502>),
  Angel Galvez-Merchan [aut] (<https://orcid.org/0000-0001-7420-8697>),
  Lambda Moses [aut] (<https://orcid.org/0000-0002-7092-9427>),
  Laura Luebbert [ctb] (<https://orcid.org/0000-0003-1379-2927>),
  Lior Pachter [aut, rev, ths] (<https://orcid.org/0000-0002-9164-6231>)
Maintainer: Kayla Jackson <kaylajac@caltech.edu>
Built: R 4.3.0; ; 2023-07-11 10:25:57 UTC; unix
