compEpiTools-package	compEpiTools-package
compEpiTools	compEpiTools-package
countOverlapsInBins	countOverlapsInBins-methods
countOverlapsInBins,GRanges-method	countOverlapsInBins-methods
countOverlapsInBins-methods	countOverlapsInBins-methods
distanceFromTSS	distanceFromTSS-methods
distanceFromTSS,GRanges-method	distanceFromTSS-methods
distanceFromTSS-methods	distanceFromTSS-methods
enhancers	enhancers
enhancers,GRanges-method	enhancers
enhancers-methods	enhancers
featuresLength	makeGtfFromDb
featuresLength,TxDb-method	makeGtfFromDb
featuresLength-methods	makeGtfFromDb
findLncRNA	findLncRNA
getPromoterClass	getPromoterClass-methods
getPromoterClass,TxDb-method	getPromoterClass-methods
getPromoterClass-methods	getPromoterClass-methods
GR2fasta	GR2fasta-methods
GR2fasta,GRanges-method	GR2fasta-methods
GR2fasta-methods	GR2fasta-methods
GRanges2ucsc	GRanges2ucsc-methods
GRanges2ucsc,GRanges-method	GRanges2ucsc-methods
GRanges2ucsc-methods	GRanges2ucsc-methods
GRangesInPromoters	GRangesInPromoters-methods
GRangesInPromoters,GRanges-method	GRangesInPromoters-methods
GRangesInPromoters-methods	GRangesInPromoters-methods
GRannotate	GRannotate-methods
GRannotate,GRanges-method	GRannotate-methods
GRannotate-methods	GRannotate-methods
GRannotateSimple	GRannotateSimple
GRannotateSimple,GRanges-method	GRannotateSimple
GRannotateSimple-methods	GRannotateSimple
GRbaseCoverage	GRbaseCoverage-methods
GRbaseCoverage,GRanges-method	GRbaseCoverage-methods
GRbaseCoverage-methods	GRbaseCoverage-methods
GRcoverage	GRcoverage-methods
GRcoverage,GRanges-method	GRcoverage-methods
GRcoverage-methods	GRcoverage-methods
GRcoverageInbins	GRcoverage-methods
GRcoverageInbins,GRanges-method	GRcoverage-methods
GRcoverageInbins-methods	GRcoverage-methods
GRcoverageSummit	GRcoverageSummit-methods
GRcoverageSummit,GRanges-method	GRcoverageSummit-methods
GRcoverageSummit-methods	GRcoverageSummit-methods
GRenrichment	GRenrichment-methods
GRenrichment,GRanges-method	GRenrichment-methods
GRenrichment-methods	GRenrichment-methods
GRmidpoint	GRmidpoint-methods
GRmidpoint,GRanges-method	GRmidpoint-methods
GRmidpoint-methods	GRmidpoint-methods
GRsetwidth	GRsetwidth
GRsetwidth,GRanges-method	GRsetwidth
GRsetwidth-methods	GRsetwidth
heatmapData	heatmapData
heatmapPlot	heatmapPlot
makeGtfFromDb	makeGtfFromDb
makeGtfFromDb,TxDb-method	makeGtfFromDb
makeGtfFromDb-methods	makeGtfFromDb
matchEnhancers	matchEnhancers
matchEnhancers,GRanges-method	matchEnhancers
matchEnhancers-methods	matchEnhancers
overlapOfGRanges	overlapOfGRanges-methods
overlapOfGRanges,GRanges-method	overlapOfGRanges-methods
overlapOfGRanges-methods	overlapOfGRanges-methods
palette2d	palette2d
plotStallingIndex	plotStallingIndex
simplifyGOterms	simplifyGOterms
stallingIndex	stallingIndex
topGOres	topGOres
TSS	TSS
ucsc2GRanges	ucsc2GRanges
unionMaxScore	unionMaxScore-methods
unionMaxScore,GRanges-method	unionMaxScore-methods
unionMaxScore-methods	unionMaxScore-methods
