compcodeR-package	compcodeR-package
add_replicates	add_replicates
baySeq.createRmd	baySeq.createRmd
checkDataObject	checkDataObject
checkParamMatrix	checkParamMatrix
checkParamVector	checkParamVector
checkSpecies	checkSpecies
checkTableConsistency	checkTableConsistency
check_compData	check_compData
check_compData_results	check_compData_results
check_phyloCompData	check_phyloCompData
compcodeR	compcodeR-package
compData	compData
compData-class	compData-class
computeFactorLengths	computeFactorLengths
convertcompDataToList	convertcompDataToList
convertListTocompData	convertListTocompData
convertListTophyloCompData	convertListTophyloCompData
convertphyloCompDataToList	convertphyloCompDataToList
DESeq2.createRmd	DESeq2.createRmd
DESeq2.length.createRmd	DESeq2.length.createRmd
DSS.createRmd	DSS.createRmd
EBSeq.createRmd	EBSeq.createRmd
edgeR.exact.createRmd	edgeR.exact.createRmd
edgeR.GLM.createRmd	edgeR.GLM.createRmd
extract_results_phylolm	extract_results_phylolm
generateCodeHTMLs	generateCodeHTMLs
generateLengths	generateLengths
generateLengthsPhylo	generateLengthsPhylo
generateSyntheticData	generateSyntheticData
getNegativeBinomialDispersion	getNegativeBinomialDispersion
getNegativeBinomialMean	getNegativeBinomialMean
getNegativeBinomialParameters	getNegativeBinomialParameters
getTree	getTree
get_model_factor	get_model_factor
get_poisson_log_normal_parameters	get_poisson_log_normal_parameters
lengthNorm.limma.createRmd	lengthNorm.limma.createRmd
lengthNorm.sva.limma.createRmd	lengthNorm.sva.limma.createRmd
listcreateRmd	listcreateRmd
logcpm.limma.createRmd	logcpm.limma.createRmd
NBPSeq.createRmd	NBPSeq.createRmd
NB_to_PLN	NB_to_PLN
nEffNaive	nEffNaive
nEffRatio	nEffRatio
NOISeq.prenorm.createRmd	NOISeq.prenorm.createRmd
phyloCompData	phyloCompData
phyloCompData-class	phyloCompData-class
phyloCompDataFromCompData	phyloCompDataFromCompData
phylolm.createRmd	phylolm.createRmd
phylolm_analysis	phylolm_analysis
runComparison	runComparison
runComparisonGUI	runComparisonGUI
runDiffExp	runDiffExp
scale_variance_process	scale_variance_process
show,compData-method	show-compData-method
show,phyloCompData-method	show-phyloCompData-method
show_compData	show_compData
simulateData	simulateData
simulateDataPhylo	simulateDataPhylo
simulatePhyloPoissonLogNormal	simulatePhyloPoissonLogNormal
sqrtcpm.limma.createRmd	sqrtcpm.limma.createRmd
summarizeSyntheticDataSet	summarizeSyntheticDataSet
TCC.createRmd	TCC.createRmd
ttest.createRmd	ttest.createRmd
voom.limma.createRmd	voom.limma.createRmd
voom.ttest.createRmd	voom.ttest.createRmd
writeNormalization	writeNormalization
