addLink	addLink
arrayMult	arrayMult
buildCentMat	buildCentMat
buildCompMat	buildCompMat
buildConfMat	buildConfMat
buildCovMat	buildCovMat
buildEmptyJac	buildEmptyJac
buildMarginalOffset	buildMarginalOffset
buildMu	buildMu
buildMuMargins	buildMuMargins
buildOffsetModel	buildOffsetModel
checkAlias	checkAlias
checkMeanVarTrend	checkMeanVarTrend
checkMonotonicity	checkMonotonicity
combi	combi
convPlot	convPlot
deriv2LagrangianFeatures	deriv2LagrangianFeatures
deriv2LagrangianLatentVars	deriv2LagrangianLatentVars
deriv2LagrangianLatentVarsConstr	deriv2LagrangianLatentVarsConstr
derivLagrangianFeatures	derivLagrangianFeatures
derivLagrangianLatentVars	derivLagrangianLatentVars
derivLagrangianLatentVarsConstr	derivLagrangianLatentVarsConstr
estFeatureParameters	estFeatureParameters
estIndepModel	estIndepModel
estLatentVars	estLatentVars
estMeanVarTrend	estMeanVarTrend
estOff	estOff
extractCoords	extractCoords
extractData	extractData
extractMat	extractMat
extractMat,ExpressionSet-method	extractMat
extractMat,matrix-method	extractMat
extractMat,SummarizedExperiment-method	extractMat
filterConfounders	filterConfounders
getInflLatentVar	getInflLatentVar
gramSchmidtOrth	gramSchmidtOrth
indentPlot	indentPlot
inflPlot	inflPlot
influence.combi	influence.combi
jacConfounders	jacConfounders
jacConfoundersComp	jacConfoundersComp
jacFeatures	jacFeatures
jacLatentVars	jacLatentVars
jacLatentVarsConstr	jacLatentVarsConstr
plot.combi	plot.combi
polyHorner	polyHorner
predictSpline	predictSpline
prepareJacMat	prepareJacMat
prepareJacMatComp	prepareJacMatComp
prepareScoreMat	prepareScoreMat
print.combi	print.combi
quasiJacIndep	quasiJacIndep
quasiScoreIndep	quasiScoreIndep
rowMultiply	rowMultiply
scaleCoords	scaleCoords
scoreConfounders	scoreConfounders
scoreConfoundersComp	scoreConfoundersComp
scoreFeatureParams	scoreFeatureParams
scoreLatentVars	scoreLatentVars
seqM	seqM
trimOnConfounders	trimOnConfounders
zhangMetabo	zhangMetabo
zhangMetavars	zhangMetavars
zhangMicrobio	zhangMicrobio
