cogeqc-package	cogeqc-package
assess_orthogroups	assess_orthogroups
assess_synnet	assess_synnet
assess_synnet_list	assess_synnet_list
batch_summary	batch_summary
busco_is_installed	busco_is_installed
calculate_H	calculate_H
cogeqc	cogeqc-package
compare_genome_stats	compare_genome_stats
compare_orthogroups	compare_orthogroups
fit_sft	fit_sft
get_genome_stats	get_genome_stats
interpro_ath	interpro_ath
interpro_bol	interpro_bol
list_busco_datasets	list_busco_datasets
og	og
plot_busco	plot_busco
plot_duplications	plot_duplications
plot_genes_in_ogs	plot_genes_in_ogs
plot_genome_stats	plot_genome_stats
plot_og_overlap	plot_og_overlap
plot_og_sizes	plot_og_sizes
plot_orthofinder_stats	plot_orthofinder_stats
plot_species_specific_ogs	plot_species_specific_ogs
plot_species_tree	plot_species_tree
read_busco	read_busco
read_orthofinder_stats	read_orthofinder_stats
read_orthogroups	read_orthogroups
run_busco	run_busco
synnet	synnet
tree	tree
