# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Sat Nov  2 21:31:00 2019
# ------------------------------------------------

package:
    name: bioconductor-coexnet
    version: 1.8.0
source:
    md5: f7a3d7940240da58417abb30d63af455
    url:
        - https://bioarchive.galaxyproject.org/coexnet_1.8.0.tar.gz
        - https://bioconductor.org/packages/3.10/bioc/src/contrib/coexnet_1.8.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-coexnet/bioconductor-coexnet_1.8.0_src_all.tar.gz
build:
    noarch: generic
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r36_0
requirements:
    host:
        - _libgcc_mutex 0.1 main
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.31.1 h7fc9f1b_2
        - binutils_linux-64 2.31.1 h6176602_12
        - bioconductor-acde 1.16.0 r36_0
        - bioconductor-affy 1.64.0 r36h516909a_0
        - bioconductor-affyio 1.56.0 r36h516909a_0
        - bioconductor-biobase 2.46.0 r36h516909a_0
        - bioconductor-biocgenerics 0.32.0 r36_0
        - bioconductor-biocparallel 1.20.0 r36he1b5a44_0
        - bioconductor-delayedarray 0.12.0 r36h516909a_0
        - bioconductor-genomeinfodb 1.22.0 r36_0
        - bioconductor-genomeinfodbdata 1.2.2 r36_0
        - bioconductor-genomicranges 1.38.0 r36h516909a_0
        - bioconductor-geoquery 2.54.0 r36_0
        - bioconductor-iranges 2.20.0 r36h516909a_0
        - bioconductor-limma 3.42.0 r36h516909a_0
        - bioconductor-minet 3.44.0 r36he1b5a44_0
        - bioconductor-multtest 2.42.0 r36h516909a_0
        - bioconductor-preprocesscore 1.48.0 r36h516909a_0
        - bioconductor-s4vectors 0.24.0 r36h516909a_0
        - bioconductor-siggenes 1.60.0 r36_0
        - bioconductor-stringdb 1.26.0 r36_0
        - bioconductor-summarizedexperiment 1.16.0 r36_0
        - bioconductor-vsn 3.54.0 r36h516909a_0
        - bioconductor-xvector 0.26.0 r36h516909a_0
        - bioconductor-zlibbioc 1.32.0 r36h516909a_0
        - bwidget 1.9.13 0
        - bzip2 1.0.8 h516909a_1
        - ca-certificates 2019.9.11 hecc5488_0
        - cairo 1.16.0 hfb77d84_1002
        - curl 7.65.3 hf8cf82a_0
        - fontconfig 2.13.1 h86ecdb6_1001
        - freetype 2.10.0 he983fc9_1
        - fribidi 1.0.5 h516909a_1002
        - gcc_impl_linux-64 7.3.0 habb00fd_2
        - gcc_linux-64 7.3.0 h553295d_12
        - gettext 0.19.8.1 hc5be6a0_1002
        - gfortran_impl_linux-64 7.3.0 hdf63c60_2
        - gfortran_linux-64 7.3.0 h553295d_12
        - glib 2.58.3 h6f030ca_1002
        - graphite2 1.3.13 hf484d3e_1000
        - gsl 2.5 h294904e_1
        - gxx_impl_linux-64 7.3.0 hdf63c60_2
        - gxx_linux-64 7.3.0 h553295d_12
        - harfbuzz 2.4.0 h9f30f68_3
        - icu 64.2 he1b5a44_1
        - jpeg 9c h14c3975_1001
        - krb5 1.16.3 h05b26f9_1001
        - libblas 3.8.0 14_openblas
        - libcblas 3.8.0 14_openblas
        - libcurl 7.65.3 hda55be3_0
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 he1b5a44_1006
        - libgcc-ng 9.1.0 hdf63c60_0
        - libgfortran-ng 7.3.0 hdf63c60_2
        - libiconv 1.15 h516909a_1005
        - liblapack 3.8.0 14_openblas
        - libopenblas 0.3.7 h6e990d7_2
        - libpng 1.6.37 hed695b0_0
        - libssh2 1.8.2 h22169c7_2
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - libtiff 4.0.10 hfc65ed5_1004
        - libuuid 2.32.1 h14c3975_1000
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.10 hee79883_0
        - lz4-c 1.8.3 he1b5a44_1001
        - make 4.2.1 h14c3975_2004
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1c h516909a_0
        - pandoc 2.7.3 0
        - pango 1.42.4 ha030887_1
        - pcre 8.43 he1b5a44_0
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - r-askpass 1.1 r36hcdcec82_1
        - r-assertthat 0.2.1 r36h6115d3f_1
        - r-backports 1.1.5 r36hcdcec82_0
        - r-base 3.6.1 hba50c9b_5
        - r-base64enc 0.1_3 r36hcdcec82_1003
        - r-bh 1.69.0_1 r36h6115d3f_1
        - r-biocmanager 1.30.9 r36h6115d3f_0
        - r-bit 1.1_14 r36hcdcec82_1
        - r-bit64 0.9_7 r36hcdcec82_1001
        - r-bitops 1.0_6 r36hcdcec82_1003
        - r-blob 1.2.0 r36_1
        - r-boot 1.3_23 r36h6115d3f_2
        - r-catools 1.17.1.2 r36h0357c0b_1
        - r-chron 2.3_54 r36hcdcec82_0
        - r-cli 1.1.0 r36h6115d3f_2
        - r-clipr 0.7.0 r36h6115d3f_0
        - r-colorspace 1.4_1 r36hcdcec82_1
        - r-crayon 1.3.4 r36h6115d3f_1002
        - r-curl 4.2 r36hcdcec82_0
        - r-dbi 1.0.0 r36h6115d3f_1002
        - r-digest 0.6.22 r36h0357c0b_0
        - r-dplyr 0.8.3 r36h0357c0b_3
        - r-ellipsis 0.3.0 r36hcdcec82_0
        - r-evaluate 0.14 r36h6115d3f_1
        - r-fansi 0.4.0 r36hcdcec82_1001
        - r-formatr 1.7 r36h6115d3f_1
        - r-futile.logger 1.4.3 r36h6115d3f_1002
        - r-futile.options 1.0.1 r36h6115d3f_1001
        - r-gdata 2.18.0 r36h6115d3f_1002
        - r-ggplot2 3.2.1 r36h6115d3f_0
        - r-glue 1.3.1 r36hcdcec82_1
        - r-gplots 3.0.1.1 r36h6115d3f_1
        - r-gsubfn 0.7 r36h6115d3f_1001
        - r-gtable 0.3.0 r36h6115d3f_2
        - r-gtools 3.8.1 r36hcdcec82_1003
        - r-hash 3.0.1 r36h6115d3f_1
        - r-highr 0.8 r36h6115d3f_1
        - r-hms 0.5.2 r36h6115d3f_0
        - r-htmltools 0.4.0 r36h0357c0b_0
        - r-httr 1.4.1 r36h6115d3f_1
        - r-igraph 1.2.4.1 r36h6786f55_2
        - r-infotheo 1.2.0 r36he1b5a44_1003
        - r-jsonlite 1.6 r36hcdcec82_1001
        - r-kernsmooth 2.23_15 r36h9bbef5b_1004
        - r-knitr 1.25 r36h6115d3f_0
        - r-labeling 0.3 r36h6115d3f_1002
        - r-lambda.r 1.2.4 r36h6115d3f_0
        - r-lattice 0.20_38 r36hcdcec82_1002
        - r-lazyeval 0.2.2 r36hcdcec82_1
        - r-lifecycle 0.1.0 r36h6115d3f_0
        - r-magrittr 1.5 r36h6115d3f_1002
        - r-markdown 1.1 r36hcdcec82_0
        - r-mass 7.3_51.4 r36hcdcec82_1
        - r-matrix 1.2_17 r36hcdcec82_1
        - r-matrixstats 0.55.0 r36hcdcec82_0
        - r-memoise 1.1.0 r36h6115d3f_1003
        - r-mgcv 1.8_29 r36hcdcec82_0
        - r-mime 0.7 r36hcdcec82_1
        - r-munsell 0.5.0 r36h6115d3f_1002
        - r-nlme 3.1_141 r36h9bbef5b_1
        - r-openssl 1.4.1 r36h9c8475f_0
        - r-pillar 1.4.2 r36h6115d3f_2
        - r-pkgconfig 2.0.3 r36h6115d3f_0
        - r-plogr 0.2.0 r36h6115d3f_1002
        - r-plotrix 3.7_6 r36h6115d3f_1
        - r-plyr 1.8.4 r36h0357c0b_1003
        - r-png 0.1_7 r36hcdcec82_1003
        - r-prettyunits 1.0.2 r36h6115d3f_1002
        - r-proto 1.0.0 r36_2002
        - r-purrr 0.3.3 r36hcdcec82_0
        - r-r6 2.4.0 r36h6115d3f_2
        - r-rcolorbrewer 1.1_2 r36h6115d3f_1002
        - r-rcpp 1.0.2 r36h0357c0b_0
        - r-rcurl 1.95_4.12 r36hcdcec82_1
        - r-readr 1.3.1 r36h0357c0b_1002
        - r-reshape2 1.4.3 r36h0357c0b_1004
        - r-rlang 0.4.1 r36hcdcec82_0
        - r-rmarkdown 1.16 r36h6115d3f_0
        - r-rsqlite 2.1.2 r36h0357c0b_1
        - r-scales 1.0.0 r36h0357c0b_1002
        - r-scrime 1.3.5 r36h6115d3f_0
        - r-snow 0.4_3 r36h6115d3f_1001
        - r-sqldf 0.4_11 r36h6115d3f_1
        - r-stringi 1.4.3 r36h0e574ca_3
        - r-stringr 1.4.0 r36h6115d3f_1
        - r-survival 2.44_1.1 r36hcdcec82_1
        - r-sys 3.3 r36hcdcec82_0
        - r-tibble 2.1.3 r36hcdcec82_1
        - r-tidyr 1.0.0 r36h0357c0b_0
        - r-tidyselect 0.2.5 r36h0357c0b_1001
        - r-tinytex 0.17 r36h6115d3f_0
        - r-utf8 1.1.4 r36hcdcec82_1001
        - r-vctrs 0.2.0 r36hcdcec82_1
        - r-viridislite 0.3.0 r36h6115d3f_1002
        - r-withr 2.1.2 r36h6115d3f_1001
        - r-xfun 0.10 r36h6115d3f_0
        - r-xml2 1.2.2 r36h0357c0b_0
        - r-yaml 2.2.0 r36hcdcec82_1002
        - r-zeallot 0.1.0 r36h6115d3f_1001
        - readline 8.0 hf8c457e_0
        - sed 4.7 h1bed415_1000
        - tk 8.6.9 hed695b0_1003
        - tktable 2.10 h555a92e_3
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.9 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1006
        - zstd 1.4.3 h3b9ef0a_0
    run:
        - bioconductor-acde >=1.16.0,<1.17.0
        - bioconductor-affy >=1.64.0,<1.65.0
        - bioconductor-biobase >=2.46.0,<2.47.0
        - bioconductor-geoquery >=2.54.0,<2.55.0
        - bioconductor-limma >=3.42.0,<3.43.0
        - bioconductor-minet >=3.44.0,<3.45.0
        - bioconductor-siggenes >=1.60.0,<1.61.0
        - bioconductor-stringdb >=1.26.0,<1.27.0
        - bioconductor-summarizedexperiment >=1.16.0,<1.17.0
        - bioconductor-vsn >=3.54.0,<3.55.0
        - r-base >=3.6,<3.7.0a0
        - r-igraph
        - r-rmarkdown
test:
    commands:
        - $R -e "library('coexnet')"
about:
    description: Extracts the gene expression matrix from GEO DataSets (.CEL files)
        as a AffyBatch object. Additionally, can make the normalization process using
        two different methods (vsn and rma). The summarization (pass from multi-probe
        to one gene) uses two different criteria (Maximum value and Median of the
        samples expression data) and the process of gene differentially expressed
        analisys using two methods (sam and acde). The construction of the co-expression
        network can be conduced using two different methods, Pearson Correlation Coefficient
        (PCC) or Mutual Information (MI) and choosing a threshold value using a graph
        theory approach.
    home: https://bioconductor.org/packages/3.10/bioc/html/coexnet.html
    license: LGPL
    license_file: /opt/conda/conda-bld/bioconductor-coexnet_1572741006558/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/share/licenses/LGPL-3
    summary: 'coexnet: An R package to build CO-EXpression NETworks from Microarray
        Data'
extra:
    copy_test_source_files: true
    final: true
