# coexnet: An R package to build CO-EXpression NETworks from Microarray Data

## Documentation for package ‘coexnet’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

affy | Greene-5P01NS017771-220003: Microarray expression experiment related with Parkinson disease.
CCP | Finding Common Connection Pattern between different networks.
cofVar | Calculating the coefficient of variation for expression matrix.
createNet | Creating a co-expression network from expression matrix.
difExprs | Differential expression analysis using two different methods.
exprMat | Calculate the expression matrix from the raw expression data.
findThreshold | Find the threshold value to create a co-expression network
geneSymbol | Create a table relating probesets with genes
getAffy | Charge and create an AffyBatch object
getInfo | Download raw expression data from GEO DataSet
info | Table with the relation between the probesets and the corresponding gene.
net1 | Simulated network #1
net2 | Simulated network #2
ppiNet | Create a protein-protein interaction network
sharedComponents | Finding shared components between diferent networks.