annotation,Codelink-method	Nondocumented-objects
arrayNew	arrayNew
arraySize	arraySize
as.matrix.Codelink	as.matrix.Codelink
averageProbes	averageProbes
averageProbes,CodelinkSet-method	averageProbes
bkgdCorrect	bkgdCorrect
chipDevice	Nondocumented-objects
chipDevice,CodelinkSet-method	Nondocumented-objects
class::CodelinkSet	CodelinkSet-class
class::CodelinkSetUnique	CodelinkSetUnique-class
class:Codelink	Codelink-class
codCorrect	bkgdCorrect
codCorrect,CodelinkSet-method	bkgdCorrect
Codelink	Codelink-class
Codelink-class	Codelink-class
codelink.example	codelink.example
Codelink2CodelinkSet	CodelinkSet-class
Codelink2eSet	Nondocumented-objects
CodelinkSet	CodelinkSet-class
CodelinkSet-class	CodelinkSet-class
CodelinkSetUnique	CodelinkSetUnique-class
CodelinkSetUnique-class	CodelinkSetUnique-class
codNormalize	normalize
codNormalize,CodelinkSet-method	normalize
codPlot	codPlot
codPlot,CodelinkSet-method	codPlot
codPlot,MArrayLM-method	codPlot
codPreprocess	CodelinkSet-class
codPreprocess,CodelinkSet-method	CodelinkSet-class
codset	codset
codUniverse	Nondocumented-objects
codUniverse,Codelink-method	Nondocumented-objects
codUniverse,CodelinkSet-method	Nondocumented-objects
createWeights	createWeights
createWeights,Codelink-method	createWeights
createWeights,CodelinkSet-method	createWeights
cutCV	cutCV
decDetect	decDetect
dim.Codelink	dim.Codelink
eSet2Codelink	Nondocumented-objects
exprs,CodelinkSet-method	CodelinkSet-class
fc2Cond	fc2Cond
filterSNR	Nondocumented-objects
filterSNR,Codelink-method	Nondocumented-objects
filterSNR,CodelinkSet-method	Nondocumented-objects
filterSNR,matrix-method	Nondocumented-objects
getBkg	CodelinkSet-class
getBkg,CodelinkSet-method	CodelinkSet-class
getFlag	CodelinkSet-class
getFlag,CodelinkSet-method	CodelinkSet-class
getInfo	CodelinkSet-class
getInfo,CodelinkSet-method	CodelinkSet-class
getInt	CodelinkSet-class
getInt,CodelinkSet-method	CodelinkSet-class
getSNR	CodelinkSet-class
getSNR,CodelinkSet-method	CodelinkSet-class
getWeight	CodelinkSet-class
getWeight,CodelinkSet-method	CodelinkSet-class
guessAnnotation	Nondocumented-objects
imageCodelink	imageCodelink
logCodelink	logCodelink
meanSNR	Nondocumented-objects
meanSNR,CodelinkSet-method	Nondocumented-objects
mergeArray	mergeArray
na2false	na2false
Nondocumented-objects	Nondocumented-objects
normalize	normalize
normalize,Codelink-method	normalize
normalize,CodelinkSet-method	normalize
plotCorrelation	plotCorrelation
plotCV	plotCV
plotDensities	plotDensities
plotDensities,Codelink-method	plotDensities
plotMA	plotMA
printHead	printHead
probeNames	CodelinkSet-class
probeNames,CodelinkSet-method	CodelinkSet-class
probeNames,CodelinkSetUnique-method	CodelinkSet-class
probeTypes	CodelinkSet-class
probeTypes,CodelinkSet-method	CodelinkSet-class
readCodelink	readCodelink
readCodelinkSet	readCodelink
readHeader	readHeader
readHeaderXLS	readHeaderXLS
reportCodelink	reportCodelink
selCV	selCV
show,Codelink-method	Codelink-class
SNR	SNR
summary,Codelink-method	Nondocumented-objects
summaryFlag	Nondocumented-objects
summaryFlag,Codelink-method	Nondocumented-objects
summaryFlag,matrix-method	Nondocumented-objects
writeCluster	Nondocumented-objects
writeCluster,Codelink-method	Nondocumented-objects
writeCluster,CodelinkSet-method	Nondocumented-objects
writeCluster,ExpressionSet-method	Nondocumented-objects
writeCluster,MArrayLM-method	Nondocumented-objects
writeCodelink	writeCodelink
writeCodelink,CodelinkSet-method	writeCodelink
[,Codelink,ANY,ANY-method	Codelink-class
[,Codelink-method	Codelink-class
