# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Oct 30 13:22:40 2020
# ------------------------------------------------

package:
    name: bioconductor-cnvranger
    version: 1.6.0
source:
    md5: c3b047904ba2302f39bc16edcbffa7fa
    url:
        - https://bioarchive.galaxyproject.org/CNVRanger_1.6.0.tar.gz
        - https://bioconductor.org/packages/3.12/bioc/src/contrib/CNVRanger_1.6.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-cnvranger/bioconductor-cnvranger_1.6.0_src_all.tar.gz
build:
    noarch: generic
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r40_0
requirements:
    host:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 1_gnu
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.35 h18a2f87_9
        - binutils_linux-64 2.35 hc3fd857_29
        - bioconductor-biobase 2.50.0 r40h037d062_0
        - bioconductor-biocgenerics 0.36.0 r40_0
        - bioconductor-biocparallel 1.24.0 r40h5f743cb_0
        - bioconductor-biostrings 2.58.0 r40h037d062_0
        - bioconductor-delayedarray 0.16.0 r40h037d062_0
        - bioconductor-edger 3.32.0 r40h5f743cb_0
        - bioconductor-gdsarray 1.10.0 r40_0
        - bioconductor-gdsfmt 1.26.0 r40h5f743cb_0
        - bioconductor-genomeinfodb 1.26.0 r40_0
        - bioconductor-genomeinfodbdata 1.2.4 r40_0
        - bioconductor-genomicranges 1.42.0 r40h037d062_0
        - bioconductor-iranges 2.24.0 r40h037d062_0
        - bioconductor-limma 3.46.0 r40h037d062_0
        - bioconductor-matrixgenerics 1.2.0 r40_0
        - bioconductor-raggedexperiment 1.14.0 r40_0
        - bioconductor-s4vectors 0.28.0 r40h037d062_0
        - bioconductor-seqarray 1.30.0 r40h5f743cb_0
        - bioconductor-snprelate 1.24.0 r40h5f743cb_0
        - bioconductor-summarizedexperiment 1.20.0 r40_0
        - bioconductor-xvector 0.30.0 r40h037d062_0
        - bioconductor-zlibbioc 1.36.0 r40h037d062_0
        - bwidget 1.9.14 0
        - bzip2 1.0.8 h516909a_3
        - c-ares 1.16.1 h516909a_3
        - ca-certificates 2020.6.20 hecda079_0
        - cairo 1.16.0 h488836b_1006
        - curl 7.71.1 he644dc0_8
        - fontconfig 2.13.1 h1056068_1002
        - freetype 2.10.4 he06d7ca_0
        - fribidi 1.0.10 h516909a_0
        - gcc_impl_linux-64 9.3.0 h28f5a38_17
        - gcc_linux-64 9.3.0 h7247604_29
        - gettext 0.19.8.1 hf34092f_1004
        - gfortran_impl_linux-64 9.3.0 h2bb4189_17
        - gfortran_linux-64 9.3.0 ha1c937c_29
        - graphite2 1.3.13 he1b5a44_1001
        - gsl 2.6 h294904e_0
        - gxx_impl_linux-64 9.3.0 h53cdd4c_17
        - gxx_linux-64 9.3.0 h0d07fa4_29
        - harfbuzz 2.7.2 hb1ce69c_1
        - icu 67.1 he1b5a44_0
        - jpeg 9d h516909a_0
        - kernel-headers_linux-64 2.6.32 h77966d4_13
        - krb5 1.17.1 hfafb76e_3
        - ld_impl_linux-64 2.35 h769bd43_9
        - libblas 3.8.0 17_openblas
        - libcblas 3.8.0 17_openblas
        - libcurl 7.71.1 hcdd3856_8
        - libedit 3.1.20191231 he28a2e2_2
        - libev 4.33 h516909a_1
        - libffi 3.2.1 he1b5a44_1007
        - libgcc-devel_linux-64 9.3.0 hfd08b2a_17
        - libgcc-ng 9.3.0 h5dbcf3e_17
        - libgfortran-ng 9.3.0 he4bcb1c_17
        - libgfortran5 9.3.0 he4bcb1c_17
        - libglib 2.66.2 h0dae87d_0
        - libgomp 9.3.0 h5dbcf3e_17
        - libiconv 1.16 h516909a_0
        - liblapack 3.8.0 17_openblas
        - libnghttp2 1.41.0 h8cfc5f6_2
        - libopenblas 0.3.10 pthreads_h4812303_5
        - libpng 1.6.37 hed695b0_2
        - libssh2 1.9.0 hab1572f_5
        - libstdcxx-devel_linux-64 9.3.0 h4084dd6_17
        - libstdcxx-ng 9.3.0 h2ae2ef3_17
        - libtiff 4.1.0 hc7e4089_6
        - libuuid 2.32.1 h14c3975_1000
        - libwebp-base 1.1.0 h516909a_3
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.10 h68273f3_2
        - lz4-c 1.9.2 he1b5a44_3
        - make 4.3 hd18ef5c_1
        - ncurses 6.2 he1b5a44_2
        - openssl 1.1.1h h516909a_0
        - pango 1.42.4 h80147aa_5
        - pcre 8.44 he1b5a44_0
        - pcre2 10.35 h2f06484_0
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - r-base 4.0.3 hc603457_2
        - r-bh 1.72.0_3 r40h6115d3f_1
        - r-bitops 1.0_6 r40hcdcec82_1004
        - r-calibrate 1.7.7 r40h6115d3f_0
        - r-crayon 1.3.4 r40h6115d3f_1003
        - r-data.table 1.13.2 r40h0eb13af_0
        - r-formatr 1.7 r40h6115d3f_2
        - r-futile.logger 1.4.3 r40h6115d3f_1003
        - r-futile.options 1.0.1 r40h6115d3f_1002
        - r-glue 1.4.2 r40hcdcec82_0
        - r-lambda.r 1.2.4 r40h6115d3f_1
        - r-lattice 0.20_41 r40hcdcec82_2
        - r-locfit 1.5_9.4 r40hcdcec82_1
        - r-magrittr 1.5 r40h6115d3f_1003
        - r-mass 7.3_53 r40hcdcec82_0
        - r-matrix 1.2_18 r40h7fa42b6_3
        - r-matrixstats 0.57.0 r40hcdcec82_0
        - r-plyr 1.8.6 r40h0357c0b_1
        - r-qqman 0.1.4 r40h6115d3f_1
        - r-rappdirs 0.3.1 r40hcdcec82_1004
        - r-rcpp 1.0.4.6 r40h0357c0b_1
        - r-rcurl 1.98_1.2 r40hcdcec82_1
        - r-reshape2 1.4.4 r40h0357c0b_1
        - r-snow 0.4_3 r40h6115d3f_1002
        - r-stringi 1.5.3 r40h604b29c_0
        - r-stringr 1.4.0 r40h6115d3f_2
        - readline 8.0 he28a2e2_2
        - sed 4.8 hbfbb72e_0
        - sysroot_linux-64 2.12 h77966d4_13
        - tk 8.6.10 hed695b0_1
        - tktable 2.10 h555a92e_3
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.12 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.5 h516909a_1
        - zlib 1.2.11 h516909a_1010
        - zstd 1.4.5 h6597ccf_2
    run:
        - bioconductor-biocgenerics >=0.36.0,<0.37.0
        - bioconductor-biocparallel >=1.24.0,<1.25.0
        - bioconductor-edger >=3.32.0,<3.33.0
        - bioconductor-gdsarray >=1.10.0,<1.11.0
        - bioconductor-gdsfmt >=1.26.0,<1.27.0
        - bioconductor-genomeinfodb >=1.26.0,<1.27.0
        - bioconductor-genomicranges >=1.42.0,<1.43.0
        - bioconductor-iranges >=2.24.0,<2.25.0
        - bioconductor-limma >=3.46.0,<3.47.0
        - bioconductor-raggedexperiment >=1.14.0,<1.15.0
        - bioconductor-s4vectors >=0.28.0,<0.29.0
        - bioconductor-snprelate >=1.24.0,<1.25.0
        - bioconductor-summarizedexperiment >=1.20.0,<1.21.0
        - r-base >=4.0,<4.1.0a0
        - r-data.table
        - r-lattice
        - r-plyr
        - r-qqman
        - r-rappdirs
        - r-reshape2
test:
    commands:
        - $R -e "library('CNVRanger')"
about:
    description: The CNVRanger package implements a comprehensive tool suite for CNV
        analysis. This includes functionality for summarizing individual CNV calls
        across a population, assessing overlap with functional genomic regions, and
        association analysis with gene expression and quantitative phenotypes.
    home: https://bioconductor.org/packages/3.12/bioc/html/CNVRanger.html
    license: Artistic-2.0
    summary: Summarization and expression/phenotype association of CNV ranges
extra:
    copy_test_source_files: true
    final: true
