cnvEQTL                 CNV-expression association analysis
cnvGWAS                 Run the CNV-GWAS
cnvOncoPrint            OncoPrint plot for CNV regions
generateGDS             Produce CNV-GDS for the phenotyped samples
importLrrBaf            Import LRR and BAF from text files used in the
                        CNV analysis
plotEQTL                Plot EQTL region
plotManhattan           Manhattan Plot
plotRecurrentRegions    Plot recurrent CNV regions
populationRanges        Summarizing CNV ranges across a population
setupCnvGWAS            Setup the folders and files to run CNV-GWAS
                        analysis
