{% set version = "1.6.0" %}
{% set name = "CNVRanger" %}
{% set bioc = "3.12" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: c3b047904ba2302f39bc16edcbffa7fa
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: AnnotationHub, BSgenome.Btaurus.UCSC.bosTau6.masked, BiocStyle, ComplexHeatmap, Gviz, MultiAssayExperiment, TCGAutils, curatedTCGAData, ensembldb, grid, knitr, regioneR, rmarkdown
requirements:
  host:
    - 'bioconductor-biocgenerics >=0.36.0,<0.37.0'
    - 'bioconductor-biocparallel >=1.24.0,<1.25.0'
    - 'bioconductor-edger >=3.32.0,<3.33.0'
    - 'bioconductor-gdsarray >=1.10.0,<1.11.0'
    - 'bioconductor-gdsfmt >=1.26.0,<1.27.0'
    - 'bioconductor-genomeinfodb >=1.26.0,<1.27.0'
    - 'bioconductor-genomicranges >=1.42.0,<1.43.0'
    - 'bioconductor-iranges >=2.24.0,<2.25.0'
    - 'bioconductor-limma >=3.46.0,<3.47.0'
    - 'bioconductor-raggedexperiment >=1.14.0,<1.15.0'
    - 'bioconductor-s4vectors >=0.28.0,<0.29.0'
    - 'bioconductor-snprelate >=1.24.0,<1.25.0'
    - 'bioconductor-summarizedexperiment >=1.20.0,<1.21.0'
    - r-base
    - r-data.table
    - r-lattice
    - r-plyr
    - r-qqman
    - r-rappdirs
    - r-reshape2
  run:
    - 'bioconductor-biocgenerics >=0.36.0,<0.37.0'
    - 'bioconductor-biocparallel >=1.24.0,<1.25.0'
    - 'bioconductor-edger >=3.32.0,<3.33.0'
    - 'bioconductor-gdsarray >=1.10.0,<1.11.0'
    - 'bioconductor-gdsfmt >=1.26.0,<1.27.0'
    - 'bioconductor-genomeinfodb >=1.26.0,<1.27.0'
    - 'bioconductor-genomicranges >=1.42.0,<1.43.0'
    - 'bioconductor-iranges >=2.24.0,<2.25.0'
    - 'bioconductor-limma >=3.46.0,<3.47.0'
    - 'bioconductor-raggedexperiment >=1.14.0,<1.15.0'
    - 'bioconductor-s4vectors >=0.28.0,<0.29.0'
    - 'bioconductor-snprelate >=1.24.0,<1.25.0'
    - 'bioconductor-summarizedexperiment >=1.20.0,<1.21.0'
    - r-base
    - r-data.table
    - r-lattice
    - r-plyr
    - r-qqman
    - r-rappdirs
    - r-reshape2
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: Artistic-2.0
  summary: 'Summarization and expression/phenotype association of CNV ranges'
  description: 'The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and association analysis with gene expression and quantitative phenotypes.'

