Package: CNVgears
Type: Package
Title: A Framework of Functions to Combine, Analize and Interpret CNVs
        Calling Results
Version: 1.8.0
Authors@R: person("Simone", "Montalbano", email="simone.montalbano@protonmail.com", role=c("cre", "aut"))
Description: This package contains a set of functions to perform several type of 
    processing and analysis on CNVs calling pipelines/algorithms results in an 
    integrated manner and regardless of the raw data type (SNPs array or NGS). It 
    provides functions to combine multiple CNV calling results into a single object, 
    filter them, compute CNVRs (CNV Regions) and inheritance patterns, detect genic
    load, and more. The package is best suited for studies in human family-based 
    cohorts.
Depends: R (>= 4.1), data.table
Imports: ggplot2
Suggests: VariantAnnotation, DelayedArray, knitr, biomaRt, evobiR,
        rmarkdown, devtools, cowplot, usethis, scales, testthat,
        GenomicRanges, cn.mops, R.utils
License: GPL-3
Encoding: UTF-8
LazyData: true
biocViews: Software, WorkflowStep, Preprocessing
BugReports: https://github.com/SinomeM/CNVgears/issues
RoxygenNote: 7.1.1
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/CNVgears
git_branch: RELEASE_3_17
git_last_commit: f338168
git_last_commit_date: 2023-04-25
Date/Publication: 2023-04-25
NeedsCompilation: no
Packaged: 2023-04-25 20:39:05 UTC; biocbuild
Author: Simone Montalbano [cre, aut]
Maintainer: Simone Montalbano <simone.montalbano@protonmail.com>
Built: R 4.3.0; ; 2023-07-07 08:37:20 UTC; unix
