{% set version = "1.12.0" %}
{% set name = "CNVfilteR" %}
{% set bioc = "3.16" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: f8e07e618bd0bd6ee5cae4feb3ef93ab
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: knitr, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, rmarkdown
requirements:
  host:
    - 'bioconductor-biostrings >=2.66.0,<2.67.0'
    - 'bioconductor-copynumberplots >=1.14.0,<1.15.0'
    - 'bioconductor-genomeinfodb >=1.34.0,<1.35.0'
    - 'bioconductor-genomicranges >=1.50.0,<1.51.0'
    - 'bioconductor-iranges >=2.32.0,<2.33.0'
    - 'bioconductor-karyoploter >=1.24.0,<1.25.0'
    - 'bioconductor-regioner >=1.30.0,<1.31.0'
    - 'bioconductor-rsamtools >=2.14.0,<2.15.0'
    - 'bioconductor-summarizedexperiment >=1.28.0,<1.29.0'
    - 'bioconductor-variantannotation >=1.44.0,<1.45.0'
    - r-assertthat
    - r-base
    - r-pracma
  run:
    - 'bioconductor-biostrings >=2.66.0,<2.67.0'
    - 'bioconductor-copynumberplots >=1.14.0,<1.15.0'
    - 'bioconductor-genomeinfodb >=1.34.0,<1.35.0'
    - 'bioconductor-genomicranges >=1.50.0,<1.51.0'
    - 'bioconductor-iranges >=2.32.0,<2.33.0'
    - 'bioconductor-karyoploter >=1.24.0,<1.25.0'
    - 'bioconductor-regioner >=1.30.0,<1.31.0'
    - 'bioconductor-rsamtools >=2.14.0,<2.15.0'
    - 'bioconductor-summarizedexperiment >=1.28.0,<1.29.0'
    - 'bioconductor-variantannotation >=1.44.0,<1.45.0'
    - r-assertthat
    - r-base
    - r-pracma
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: Artistic-2.0
  summary: 'Identifies false positives of CNV calling tools by using SNV calls'
  description: 'CNVfilteR identifies those CNVs that can be discarded by using the single nucleotide variant (SNV) calls that are usually obtained in common NGS pipelines.'

