Clonality-package	Clonality-package
ave.adj.probes	ave.adj.probes
calc.freq	Clonality-internal
calculateLR	Clonality-internal
chromosomePlots	chromosomePlots
class.all	Clonality-internal
Clonality	Clonality-package
clonality.analysis	clonality.analysis
clonEM	clonEM
CM.pvalue	Clonality-internal
complexts	Clonality-internal
create.mutation.matrix	create.mutation.matrix
ECMtesting	ECMtesting
freqdata	freqdata
func	Clonality-internal
genomewidePlots	genomewidePlots
get.mutation.frequencies	get.mutation.frequencies
get.oneseg.bdry	Clonality-internal
GL	Clonality-internal
grantLR	Clonality-internal
grid.lik	grid.lik
histogramPlot	histogramPlot
indiv.test	Clonality-internal
lcis	lcis
LOHclonality	LOHclonality
LRpv	Clonality-internal
LRtesting3or4tumors	LRtesting3or4tumors
LRts	Clonality-internal
model.lik	model.lik
mutation.proba	mutation.proba
mutation.rem	mutation.rem
oneseg	Clonality-internal
prettyplot	Clonality-internal
print.mutation.proba	print.mutation.proba
print.mutation.rem	print.mutation.rem
refvector	Clonality-internal
segment1	Clonality-internal
SNVtest	SNVtest
SNVtest2	SNVtest2
splitChromosomes	splitChromosomes
tumors	Clonality-internal
xidens	xidens
