# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Nov  2 14:02:55 2021
# ------------------------------------------------

package:
  name: bioconductor-clomial
  version: 1.30.0
source:
  md5: bd99847eccc6c4aad7e257b053badfd1
  url:
    - https://bioarchive.galaxyproject.org/Clomial_1.30.0.tar.gz
    - https://bioconductor.org/packages/3.14/bioc/src/contrib/Clomial_1.30.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-clomial/bioconductor-clomial_1.30.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_1
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2021.10.8 ha878542_0
    - cairo 1.16.0 h6cf1ce9_1008
    - curl 7.79.1 h494985f_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.13.1 hba837de_1005
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.10.4 h0708190_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 9.4.0 h03d3576_11
    - gcc_linux-64 9.4.0 h391b98a_1
    - gettext 0.19.8.1 h73d1719_1008
    - gfortran_impl_linux-64 9.4.0 h0003116_11
    - gfortran_linux-64 9.4.0 hf0ab688_1
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 9.4.0 h03d3576_11
    - gxx_linux-64 9.4.0 h0316aca_1
    - harfbuzz 3.0.0 h83ec7ef_1
    - icu 68.2 h9c3ff4c_0
    - jbig 2.1 h7f98852_2003
    - jpeg 9d h36c2ea0_0
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - krb5 1.19.2 h48eae69_2
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - lerc 3.0 h9c3ff4c_0
    - libblas 3.9.0 12_linux64_openblas
    - libcblas 3.9.0 12_linux64_openblas
    - libcurl 7.79.1 h494985f_1
    - libdeflate 1.8 h7f98852_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.4.2 h9c3ff4c_4
    - libgcc-devel_linux-64 9.4.0 hd854feb_11
    - libgcc-ng 11.2.0 h1d223b6_11
    - libgfortran-ng 11.2.0 h69a702a_11
    - libgfortran5 11.2.0 h5c6108e_11
    - libglib 2.70.0 h174f98d_1
    - libgomp 11.2.0 h1d223b6_11
    - libiconv 1.16 h516909a_0
    - liblapack 3.9.0 12_linux64_openblas
    - libnghttp2 1.43.0 ha19adfc_1
    - libopenblas 0.3.18 pthreads_h8fe5266_0
    - libpng 1.6.37 h21135ba_2
    - libsanitizer 9.4.0 h79bfe98_11
    - libssh2 1.10.0 ha35d2d1_2
    - libstdcxx-devel_linux-64 9.4.0 hd854feb_11
    - libstdcxx-ng 11.2.0 he4da1e4_11
    - libtiff 4.3.0 h6f004c6_2
    - libuuid 2.32.1 h7f98852_1000
    - libwebp-base 1.2.1 h7f98852_0
    - libxcb 1.13 h7f98852_1003
    - libxml2 2.9.12 h72842e0_0
    - libzlib 1.2.11 h36c2ea0_1013
    - lz4-c 1.9.3 h9c3ff4c_1
    - make 4.3 hd18ef5c_1
    - ncurses 6.2 h58526e2_4
    - openssl 3.0.0 h7f98852_1
    - pango 1.48.10 h54213e6_2
    - pcre 8.45 h9c3ff4c_0
    - pcre2 10.37 h032f7d1_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-base 4.1.1 hb93adac_1
    - r-matrixstats 0.61.0 r41hcfec24a_0
    - r-permute 0.9_5 r41h785f33e_3
    - readline 8.1 h46c0cb4_0
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.11 h27826a3_1
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.2 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h36c2ea0_1013
    - zstd 1.5.0 ha95c52a_0
  run:
    - r-base >=4.1,<4.2.0a0
    - r-matrixstats
    - r-permute
test:
  commands:
    - $R -e "library('Clomial')"
about:
  description: Clomial fits binomial distributions to counts obtained from Next Gen
    Sequencing data of multiple samples of the same tumor. The trained parameters
    can be interpreted to infer the clonal structure of the tumor.
  home: https://bioconductor.org/packages/3.14/bioc/html/Clomial.html
  license: GPL (>= 2)
  license_file: /opt/conda/conda-bld/bioconductor-clomial_1635866035568/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/share/licenses/GPL-3
  summary: Infers clonal composition of a tumor
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:clomial
