Package: cleanUpdTSeq
Type: Package
Title: This package classifies putative polyadenylation sites as true
        or false/internally oligodT primed
Version: 1.28.0
Date: 2020-07-09
Author: Sarah Sheppard, Jianhong Ou, Nathan Lawson, Lihua Julie Zhu
Maintainer: Jianhong Ou <Jianhong.Ou@duke.edu>; Lihua Julie Zhu
 <Julie.Zhu@umassmed.edu>
Depends: R (>= 3.5.0), BiocGenerics (>= 0.1.0), methods, stats
Imports: BSgenome, GenomicRanges, seqinr, e1071, GenomeInfoDb, IRanges,
        utils, BSgenome.Drerio.UCSC.danRer7
Suggests: BiocStyle, knitr, RUnit
Description: This package implements a Naive Bayes classifier for accurate
        identification of polyadenylation sites (pA sites) from oligodT based
	3 prime end sequencing such as PAS-Seq, PolyA-Seq and RNA-Seq. The classifer 
	is highly accurate and outperforms heuristic methods.
License: GPL-2
biocViews: Sequencing, SequenceMatching, Genetics, GeneRegulation
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/cleanUpdTSeq
git_branch: RELEASE_3_12
git_last_commit: 0a193f2
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-27 23:13:05 UTC; biocbuild
Built: R 4.0.3; ; 2021-04-03 10:49:33 UTC; unix
