CircSeqAlignTk-package	CircSeqAlignTk-package
align_reads	align_reads
build_index	build_index
calc_coverage	calc_coverage
CircSeqAlignTk	CircSeqAlignTk-package
CircSeqAlignTkAlign-class	CircSeqAlignTkAlign-class
CircSeqAlignTkCoverage-class	CircSeqAlignTkCoverage-class
CircSeqAlignTkRefIndex-class	CircSeqAlignTkRefIndex-class
CircSeqAlignTkSim-class	CircSeqAlignTkSim-class
filter_reads	filter_reads
generate_reads	generate_reads
get_slot_contents	get_slot_contents
merge.CircSeqAlignTkSim	merge.CircSeqAlignTkSim
plot.CircSeqAlignTkCoverage	plot_coverage
plot_coverage	plot_coverage
