# Generated by roxygen2: do not edit by hand

export(annotateBSJs)
export(annotateRepeats)
export(annotateSNPsGWAS)
export(checkProjectFolder)
export(filterCirc)
export(formatGTF)
export(getBackSplicedJunctions)
export(getCircSeqs)
export(getDeseqRes)
export(getDetectionTools)
export(getEdgerRes)
export(getMiRsites)
export(getMotifs)
export(getRandomBSJunctions)
export(getRegexPattern)
export(getSeqsAcrossBSJs)
export(getSeqsFromGRs)
export(importCircExplorer2)
export(importCircMarker)
export(importKnife)
export(importMapSplice)
export(importNCLscan)
export(importOther)
export(importUroborus)
export(initCircRNAprofiler)
export(liftBSJcoords)
export(mergeBSJunctions)
export(mergeMotifs)
export(plotExBetweenBSEs)
export(plotExPosition)
export(plotHostGenes)
export(plotLenBSEs)
export(plotLenIntrons)
export(plotMiR)
export(plotMotifs)
export(plotTotExons)
export(rearrangeMiRres)
export(volcanoPlot)
import(AnnotationHub)
import(BSgenome.Hsapiens.UCSC.hg19)
import(DESeq2)
import(dplyr)
import(edgeR)
import(ggplot2)
import(magrittr)
import(reshape2)
importFrom(BSgenome,getSeq)
importFrom(Biostrings,RNAString)
importFrom(Biostrings,RNAStringSet)
importFrom(Biostrings,oligonucleotideFrequency)
importFrom(Biostrings,reverseComplement)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(IRanges,IRanges)
importFrom(IRanges,reverse)
importFrom(R.utils,gunzip)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(gwascat,makeCurrentGwascat)
importFrom(gwascat,subsetByTraits)
importFrom(magrittr,"%>%")
importFrom(readr,read_tsv)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(rtracklayer,import)
importFrom(rtracklayer,import.chain)
importFrom(rtracklayer,liftOver)
importFrom(seqinr,swap)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(stringi,stri_locate_all)
importFrom(stringr,str_count)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract)
importFrom(universalmotif,read_meme)
importFrom(utils,data)
importFrom(utils,download.file)
importFrom(utils,read.table)
importFrom(utils,untar)
importFrom(utils,write.table)
