{% set version = "1.12.0" %}
{% set name = "circRNAprofiler" %}
{% set bioc = "3.16" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: cba2d1cfe3450d5df96b8a406a054e4e
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: testthat, knitr, roxygen2, rmarkdown, devtools, gridExtra, ggpubr, VennDiagram, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, BiocManager,
requirements:
  host:
    - 'bioconductor-annotationhub >=3.6.0,<3.7.0'
    - 'bioconductor-biostrings >=2.66.0,<2.67.0'
    - 'bioconductor-bsgenome >=1.66.0,<1.67.0'
    - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
    - 'bioconductor-deseq2 >=1.38.0,<1.39.0'
    - 'bioconductor-edger >=3.40.0,<3.41.0'
    - 'bioconductor-genomeinfodb >=1.34.0,<1.35.0'
    - 'bioconductor-genomicranges >=1.50.0,<1.51.0'
    - 'bioconductor-gwascat >=2.30.0,<2.31.0'
    - 'bioconductor-iranges >=2.32.0,<2.33.0'
    - 'bioconductor-rtracklayer >=1.58.0,<1.59.0'
    - 'bioconductor-s4vectors >=0.36.0,<0.37.0'
    - 'bioconductor-universalmotif >=1.16.0,<1.17.0'
    - r-base
    - r-dplyr
    - r-ggplot2
    - r-magrittr
    - r-r.utils
    - r-readr
    - r-reshape2
    - r-rlang
    - r-seqinr
    - r-stringi
    - r-stringr
  run:
    - 'bioconductor-annotationhub >=3.6.0,<3.7.0'
    - 'bioconductor-biostrings >=2.66.0,<2.67.0'
    - 'bioconductor-bsgenome >=1.66.0,<1.67.0'
    - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
    - 'bioconductor-deseq2 >=1.38.0,<1.39.0'
    - 'bioconductor-edger >=3.40.0,<3.41.0'
    - 'bioconductor-genomeinfodb >=1.34.0,<1.35.0'
    - 'bioconductor-genomicranges >=1.50.0,<1.51.0'
    - 'bioconductor-gwascat >=2.30.0,<2.31.0'
    - 'bioconductor-iranges >=2.32.0,<2.33.0'
    - 'bioconductor-rtracklayer >=1.58.0,<1.59.0'
    - 'bioconductor-s4vectors >=0.36.0,<0.37.0'
    - 'bioconductor-universalmotif >=1.16.0,<1.17.0'
    - r-base
    - r-dplyr
    - r-ggplot2
    - r-magrittr
    - r-r.utils
    - r-readr
    - r-reshape2
    - r-rlang
    - r-seqinr
    - r-stringi
    - r-stringr
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: GPL-3
  summary: 'circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs'
  description: 'R-based computational framework for a comprehensive in silico analysis of circRNAs. This computational framework allows to combine and analyze circRNAs previously detected by multiple publicly available annotation-based circRNA detection tools. It covers different aspects of circRNAs analysis from differential expression analysis, evolutionary conservation, biogenesis to functional analysis.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

