# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Jul 10 16:14:27 2023
# ------------------------------------------------

package:
  name: bioconductor-cimice
  version: 1.8.0
source:
  md5: 2b25b8cfb634948761ef0ab0cea2573a
  url:
    - https://bioarchive.galaxyproject.org/CIMICE_1.8.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/Archive/CIMICE/CIMICE_1.8.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/CIMICE_1.8.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-cimice/bioconductor-cimice_1.8.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r43hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.40 hf600244_0
    - bioconductor-dnacopy 1.74.1 r43h9913872_0
    - bioconductor-maftools 2.16.0 r43ha9d7317_0
    - bioconductor-rhtslib 2.2.0 r43ha9d7317_0
    - bioconductor-zlibbioc 1.46.0 r43ha9d7317_0
    - bwidget 1.9.14 ha770c72_1
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    - fontconfig 2.14.2 h14ed4e7_0
    - fonts-conda-ecosystem 1 0
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    - gcc_impl_linux-64 13.1.0 hc4be1a9_0
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    - gmp 6.2.1 h58526e2_0
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    - harfbuzz 7.3.0 hdb3a94d_0
    - icu 72.1 hcb278e6_0
    - kernel-headers_linux-64 2.6.32 he073ed8_15
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    - ld_impl_linux-64 2.40 h41732ed_0
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 17_linux64_openblas
    - libcblas 3.9.0 17_linux64_openblas
    - libcurl 8.1.2 h409715c_0
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    - libedit 3.1.20191231 he28a2e2_2
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    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 13.1.0 he3cc6c4_0
    - libgcc-ng 13.1.0 he5830b7_0
    - libgfortran-ng 13.1.0 h69a702a_0
    - libgfortran5 13.1.0 h15d22d2_0
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    - liblapack 3.9.0 17_linux64_openblas
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    - libpng 1.6.39 h753d276_0
    - libsanitizer 13.1.0 hfd8a6a1_0
    - libssh2 1.11.0 h0841786_0
    - libstdcxx-devel_linux-64 13.1.0 he3cc6c4_0
    - libstdcxx-ng 13.1.0 hfd8a6a1_0
    - libtiff 4.5.1 h8b53f26_0
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    - libwebp-base 1.3.1 hd590300_0
    - libxcb 1.15 h0b41bf4_0
    - libxml2 2.11.4 h0d562d8_0
    - libzlib 1.2.13 hd590300_5
    - make 4.3 hd18ef5c_1
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    - openssl 3.1.1 hd590300_1
    - pandoc 2.19.2 h32600fe_2
    - pango 1.50.14 heaa33ce_1
    - pcre2 10.40 hc3806b6_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-assertthat 0.2.1 r43hc72bb7e_4
    - r-base 4.3.0 hfabd6f2_1
    - r-base64enc 0.1_3 r43h57805ef_1006
    - r-bslib 0.5.0 r43hc72bb7e_1
    - r-cachem 1.0.8 r43h57805ef_1
    - r-cli 3.6.1 r43ha503ecb_1
    - r-colorspace 2.1_0 r43h57805ef_1
    - r-cpp11 0.4.4 r43hc72bb7e_0
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-data.table 1.14.8 r43h029312a_2
    - r-digest 0.6.33 r43ha503ecb_0
    - r-dplyr 1.1.2 r43ha503ecb_1
    - r-ellipsis 0.3.2 r43h57805ef_2
    - r-evaluate 0.21 r43hc72bb7e_1
    - r-expm 0.999_7 r43hd9ac46e_1
    - r-fansi 1.0.4 r43h57805ef_1
    - r-farver 2.1.1 r43ha503ecb_2
    - r-fastmap 1.1.1 r43ha503ecb_1
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    - r-fs 1.6.2 r43ha503ecb_1
    - r-generics 0.1.3 r43hc72bb7e_2
    - r-ggcorrplot 0.1.4 r43hc72bb7e_2
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    - r-ggraph 2.1.0 r43ha503ecb_2
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    - r-igraph 1.4.3 r43h9254619_1
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    - r-jquerylib 0.1.4 r43hc72bb7e_2
    - r-jsonlite 1.8.7 r43h57805ef_0
    - r-knitr 1.43 r43hc72bb7e_1
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    - r-lattice 0.21_8 r43h57805ef_1
    - r-lifecycle 1.0.3 r43hc72bb7e_2
    - r-magrittr 2.0.3 r43h57805ef_2
    - r-mass 7.3_60 r43h57805ef_1
    - r-matrix 1.6_0 r43h316c678_0
    - r-memoise 2.0.1 r43hc72bb7e_2
    - r-mgcv 1.8_42 r43h316c678_2
    - r-mime 0.12 r43h57805ef_2
    - r-munsell 0.5.0 r43hc72bb7e_1006
    - r-networkd3 0.4 r43hc72bb7e_1006
    - r-nlme 3.1_162 r43h61816a4_1
    - r-pillar 1.9.0 r43hc72bb7e_1
    - r-pkgconfig 2.0.3 r43hc72bb7e_3
    - r-plyr 1.8.8 r43ha503ecb_1
    - r-polyclip 1.10_4 r43ha503ecb_1
    - r-purrr 1.0.1 r43h57805ef_1
    - r-r6 2.5.1 r43hc72bb7e_2
    - r-rappdirs 0.3.3 r43h57805ef_2
    - r-rcolorbrewer 1.1_3 r43h785f33e_2
    - r-rcpp 1.0.10 r43ha503ecb_1
    - r-rcpparmadillo 0.12.4.1.0 r43h08d816e_0
    - r-rcppeigen 0.3.3.9.3 r43h08d816e_1
    - r-reshape2 1.4.4 r43ha503ecb_3
    - r-rlang 1.1.1 r43ha503ecb_1
    - r-rmarkdown 2.23 r43hc72bb7e_0
    - r-sass 0.4.6 r43ha503ecb_1
    - r-scales 1.2.1 r43hc72bb7e_2
    - r-stringi 1.7.12 r43hc0c3e09_2
    - r-stringr 1.5.0 r43h785f33e_1
    - r-survival 3.5_5 r43h57805ef_1
    - r-systemfonts 1.0.4 r43haf97adc_2
    - r-tibble 3.2.1 r43h57805ef_2
    - r-tidygraph 1.2.3 r43ha503ecb_1
    - r-tidyr 1.3.0 r43ha503ecb_1
    - r-tidyselect 1.2.0 r43hc72bb7e_1
    - r-tinytex 0.45 r43hc72bb7e_1
    - r-tweenr 2.0.2 r43ha503ecb_2
    - r-utf8 1.2.3 r43h57805ef_1
    - r-vctrs 0.6.3 r43ha503ecb_0
    - r-viridis 0.6.3 r43hc72bb7e_1
    - r-viridislite 0.4.2 r43hc72bb7e_1
    - r-visnetwork 2.1.2 r43hc72bb7e_2
    - r-withr 2.5.0 r43hc72bb7e_2
    - r-xfun 0.39 r43ha503ecb_1
    - r-yaml 2.3.7 r43h57805ef_1
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.8.6 h8ee46fc_0
    - xorg-libxau 1.0.11 hd590300_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.11 hd590300_0
    - xorg-libxt 1.3.0 hd590300_0
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.13 hd590300_5
    - zstd 1.5.2 hfc55251_7
  run:
    - bioconductor-maftools >=2.16.0,<2.17.0
    - r-assertthat
    - r-base >=4.3,<4.4.0a0
    - r-dplyr
    - r-expm
    - r-ggcorrplot
    - r-ggplot2
    - r-ggraph
    - r-glue
    - r-igraph
    - r-matrix
    - r-networkd3
    - r-purrr
    - r-tidygraph
    - r-tidyr
    - r-visnetwork
test:
  commands:
    - $R -e "library('CIMICE')"
about:
  description: CIMICE is a tool in the field of tumor phylogenetics and its goal is
    to build a Markov Chain (called Cancer Progression Markov Chain, CPMC) in order
    to model tumor subtypes evolution. The input of CIMICE is a Mutational Matrix,
    so a boolean matrix representing altered genes in a collection of samples. These
    samples are assumed to be obtained with single-cell DNA analysis techniques and
    the tool is specifically written to use the peculiarities of this data for the
    CMPC construction.
  home: https://bioconductor.org/packages/3.17/bioc/html/CIMICE.html
  license: Artistic-2.0
  summary: 'CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution'
extra:
  copy_test_source_files: true
  final: true
