annotate_mutational_matrix	annotate_mutational_matrix
binary_radix_sort	binary_radix_sort
build_subset_graph	build_subset_graph
build_topology_subset	build_topology_subset
chunk_reader	chunk_reader
CIMICE	CIMICE
compact_dataset	compact_dataset
computeDWNW	computeDWNW
computeDWNW_aux	computeDWNW_aux
computeUPW	computeUPW
computeUPW_aux	computeUPW_aux
compute_weights_default	compute_weights_default
corrplot_from_mutational_matrix	corrplot_from_mutational_matrix
corrplot_genes	corrplot_genes
corrplot_samples	corrplot_samples
dataset_preprocessing	dataset_preprocessing
dataset_preprocessing_population	dataset_preprocessing_population
draw_ggraph	draw_ggraph
draw_networkD3	draw_networkD3
draw_visNetwork	draw_visNetwork
example_dataset	example_dataset
example_dataset_withFreqs	example_dataset_withFreqs
fix_clonal_genotype	fix_clonal_genotype
format_labels	format_labels
gene_mutations_hist	gene_mutations_hist
get_no_of_children	get_no_of_children
graph_non_transitive_subset_topology	graph_non_transitive_subset_topology
make_dataset	make_dataset
make_labels	make_labels
normalizeDWNW	normalizeDWNW
normalizeUPW	normalizeUPW
prepare_labels	prepare_labels
quick_run	quick_run
read	read
read_CAPRI	read_CAPRI
read_CAPRIpop	read_CAPRIpop
read_CAPRIpop_string	read_CAPRIpop_string
read_CAPRI_string	read_CAPRI_string
read_MAF	read_MAF
read_matrix	read_matrix
sample_mutations_hist	sample_mutations_hist
select_genes_on_mutations	select_genes_on_mutations
select_samples_on_mutations	select_samples_on_mutations
to_dot	to_dot
update_df	update_df
