{% set version = "1.0.0" %}
{% set name = "CIMICE" %}
{% set bioc = "3.13" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 5bc773b1f19d85101812c2cc8d614f98
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: BiocStyle, knitr, rmarkdown, testthat, webshot
requirements:
  host:
    - 'bioconductor-maftools >=2.8.0,<2.9.0'
    - r-assertthat
    - r-base
    - r-dplyr
    - r-ggcorrplot
    - r-ggplot2
    - r-ggraph
    - r-glue
    - r-igraph
    - r-matrix
    - r-networkd3
    - r-purrr
    - r-relations
    - r-tidyr
    - r-visnetwork
  run:
    - 'bioconductor-maftools >=2.8.0,<2.9.0'
    - r-assertthat
    - r-base
    - r-dplyr
    - r-ggcorrplot
    - r-ggplot2
    - r-ggraph
    - r-glue
    - r-igraph
    - r-matrix
    - r-networkd3
    - r-purrr
    - r-relations
    - r-tidyr
    - r-visnetwork
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: Artistic-2.0
  summary: 'CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution'
  description: 'CIMICE is a tool in the field of tumor phylogenetics and its goal is to build a Markov Chain (called Cancer Progression Markov Chain, CPMC) in order to model tumor subtypes evolution. The input of CIMICE is a Mutational Matrix, so a boolean matrix representing altered genes in a collection of samples. These samples are assumed to be obtained with single-cell DNA analysis techniques and the tool is specifically written to use the peculiarities of this data for the CMPC construction.'

