# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Mon May 31 12:07:35 2021
# ------------------------------------------------

package:
  name: bioconductor-cimice
  version: 1.0.0
source:
  md5: 5bc773b1f19d85101812c2cc8d614f98
  url:
    - https://bioarchive.galaxyproject.org/CIMICE_1.0.0.tar.gz
    - https://bioconductor.org/packages/3.13/bioc/src/contrib/CIMICE_1.0.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-cimice/bioconductor-cimice_1.0.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
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    - binutils_impl_linux-64 2.35.1 h193b22a_2
    - binutils_linux-64 2.35 h67ddf6f_30
    - bioconductor-maftools 2.8.0 r41hd029910_0
    - bioconductor-rhtslib 1.24.0 r41hd029910_0
    - bioconductor-zlibbioc 1.38.0 r41hd029910_0
    - bwidget 1.9.14 ha770c72_0
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    - ld_impl_linux-64 2.35.1 hea4e1c9_2
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    - r-matrix 1.3_3 r41he454529_0
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    - r-nlme 3.1_152 r41h859d828_0
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    - r-stringi 1.6.2 r41hcabe038_0
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    - r-survival 3.2_11 r41hcfec24a_0
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    - r-viridis 0.6.1 r41hc72bb7e_0
    - r-viridislite 0.4.0 r41hc72bb7e_0
    - r-visnetwork 2.0.9 r41hc72bb7e_1
    - r-waldo 0.2.5 r41hc72bb7e_0
    - r-withr 2.4.2 r41hc72bb7e_0
    - r-yaml 2.2.1 r41hcfec24a_1
    - readline 8.1 h46c0cb4_0
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 h77966d4_13
    - tk 8.6.10 h21135ba_1
    - tktable 2.10 hb7b940f_3
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    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.1 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
    - zstd 1.5.0 ha95c52a_0
  run:
    - bioconductor-maftools >=2.8.0,<2.9.0
    - r-assertthat
    - r-base >=4.1,<4.2.0a0
    - r-dplyr
    - r-ggcorrplot
    - r-ggplot2
    - r-ggraph
    - r-glue
    - r-igraph
    - r-matrix
    - r-networkd3
    - r-purrr
    - r-relations
    - r-tidyr
    - r-visnetwork
test:
  commands:
    - $R -e "library('CIMICE')"
about:
  description: CIMICE is a tool in the field of tumor phylogenetics and its goal is
    to build a Markov Chain (called Cancer Progression Markov Chain, CPMC) in order
    to model tumor subtypes evolution. The input of CIMICE is a Mutational Matrix,
    so a boolean matrix representing altered genes in a collection of samples. These
    samples are assumed to be obtained with single-cell DNA analysis techniques and
    the tool is specifically written to use the peculiarities of this data for the
    CMPC construction.
  home: https://bioconductor.org/packages/3.13/bioc/html/CIMICE.html
  license: Artistic-2.0
  summary: 'CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution'
extra:
  copy_test_source_files: true
  final: true
