Package: cicero
Type: Package
Title: Precict cis-co-accessibility from single-cell chromatin
        accessibility data
Version: 1.2.0
Authors@R: c(
    person("Hannah", "Pliner", email = "hpliner@uw.edu", role = c("aut", "cre")), 
    person("Cole", "Trapnell", email = "coletrap@uw.edu", role = c("aut")))
Description: Cicero computes putative cis-regulatory maps from single-cell chromatin 
    accessibility data. It also extends monocle 2 for use in chromatin accessibility
    data.
Depends: R (>= 3.5.0), monocle, Gviz (>= 1.22.3)
License: MIT + file LICENSE
Encoding: UTF-8
Imports: assertthat (>= 0.2.0), Biobase (>= 2.37.2), BiocGenerics (>=
        0.23.0), data.table (>= 1.10.4), dplyr (>= 0.7.4), FNN (>=
        1.1), GenomicRanges (>= 1.30.3), ggplot2 (>= 2.2.1), glasso (>=
        1.8), grDevices, igraph (>= 1.1.0), IRanges (>= 2.10.5), Matrix
        (>= 1.2-12), methods, parallel, plyr (>= 1.8.4), reshape2 (>=
        1.4.3), S4Vectors (>= 0.14.7), stats, stringr (>= 1.2.0),
        tibble (>= 1.4.2), VGAM (>= 1.0-5), utils
RoxygenNote: 6.1.1
Suggests: AnnotationDbi (>= 1.38.2), knitr, rmarkdown, rtracklayer (>=
        1.36.6), testthat, vdiffr (>= 0.2.3), covr
VignetteBuilder: knitr
biocViews: Sequencing, Clustering, CellBasedAssays, ImmunoOncology
        GeneRegulation, GeneTarget, Epigenetics, ATACSeq, SingleCell
git_url: https://git.bioconductor.org/packages/cicero
git_branch: RELEASE_3_9
git_last_commit: 1690071
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: no
Packaged: 2019-05-03 03:16:37 UTC; biocbuild
Author: Hannah Pliner [aut, cre],
  Cole Trapnell [aut]
Maintainer: Hannah Pliner <hpliner@uw.edu>
Built: R 3.6.1; ; 2019-08-12 14:10:03 UTC; unix
