chromswitch-package	chromswitch
binarizePeaks	binarizePeaks
callBinary	callBinary
callSummary	callSummary
chromswitch	chromswitch
classEntropy	classEntropy
cluster	cluster
clusterEntropy	clusterEntropy
completeness	completeness
conditionalClassEntropy	conditionalClassEntropy
conditionalClusterEntropy	conditionalClusterEntropy
coordToGRanges	coordToGRanges
filterPeaks	filterPeaks
GRangesToCoord	GRangesToCoord
H3K4me3	H3K4me3
homogeneity	homogeneity
LocalPeaks	LocalPeaks-class
LocalPeaks-class	LocalPeaks-class
makeBrowserCoord	makeBrowserCoord
NMI	NMI
normalizePeaks	normalizePeaks
peaks	LocalPeaks-class
peaks,LocalPeaks-method	LocalPeaks-class
peaks-method	LocalPeaks-class
pReciprocalOverlap	pReciprocalOverlap
purity	purity
readNarrowPeak	readNarrowPeak
reducePeaks	reducePeaks
region	LocalPeaks-class
region,LocalPeaks-method	LocalPeaks-class
region-method	LocalPeaks-class
retrievePeaks	retrievePeaks
samples	LocalPeaks-class
samples,LocalPeaks-method	LocalPeaks-class
samples-method	LocalPeaks-class
summarizePeaks	summarizePeaks
vMeasure	vMeasure
winsorNorm	winsorNorm
\S4method{peaks}{LocalPeaks}	LocalPeaks-class
\S4method{region}{LocalPeaks}	LocalPeaks-class
\S4method{samples}{LocalPeaks}	LocalPeaks-class
