ChIPQC-package	ChIPQC-package
averagepeaksignal	averagepeaksignal-methods
averagepeaksignal,ChIPQCexperiment-method	averagepeaksignal-methods
averagepeaksignal,ChIPQCsample-method	averagepeaksignal-methods
averagepeaksignal,list-method	averagepeaksignal-methods
averagepeaksignal-methods	averagepeaksignal-methods
blacklist_hg19	ChIPQC-data
ChIPQC	ChIPQC
ChIPQCexperiment	ChIPQCexperiment-class
ChIPQCexperiment-class	ChIPQCexperiment-class
ChIPQCreport	ChIPQCreport
ChIPQCreport,ChIPQCexperiment-method	ChIPQCreport
ChIPQCreport,ChIPQCsample-method	ChIPQCreport
ChIPQCreport,list-method	ChIPQCreport
ChIPQCreport-methods	ChIPQCreport
ChIPQCsample	ChIPQCsample-class
ChIPQCsample-class	ChIPQCsample-class
coveragehistogram	coveragehistogram-methods
coveragehistogram,ChIPQCexperiment-method	coveragehistogram-methods
coveragehistogram,ChIPQCsample-method	coveragehistogram-methods
coveragehistogram,list-method	coveragehistogram-methods
coveragehistogram-methods	coveragehistogram-methods
crosscoverage	crosscoverage-methods
crosscoverage,ChIPQCexperiment-method	crosscoverage-methods
crosscoverage,ChIPQCsample-method	crosscoverage-methods
crosscoverage,list-method	crosscoverage-methods
crosscoverage-methods	crosscoverage-methods
duplicateRate	duplicateRate-methods
duplicateRate,ChIPQCexperiment-method	duplicateRate-methods
duplicateRate,ChIPQCsample-method	duplicateRate-methods
duplicateRate,list-method	duplicateRate-methods
duplicateRate-methods	duplicateRate-methods
duplicates	duplicates-methods
duplicates,ChIPQCexperiment-method	duplicates-methods
duplicates,ChIPQCsample-method	duplicates-methods
duplicates,list-method	duplicates-methods
duplicates-methods	duplicates-methods
example_QCexperiment	ChIPQC-data
flagtagcounts	flagtagcounts-methods
flagtagcounts,ChIPQCexperiment-method	flagtagcounts-methods
flagtagcounts,ChIPQCsample-method	flagtagcounts-methods
flagtagcounts,list-method	flagtagcounts-methods
flagtagcounts-methods	flagtagcounts-methods
fragmentlength	fragmentlength-methods
fragmentlength,ChIPQCexperiment-method	fragmentlength-methods
fragmentlength,ChIPQCsample-method	fragmentlength-methods
fragmentlength,list-method	fragmentlength-methods
fragmentlength-methods	fragmentlength-methods
FragmentLengthCrossCoverage	FragmentLengthCrossCoverage-methods
FragmentLengthCrossCoverage,ChIPQCexperiment-method	FragmentLengthCrossCoverage-methods
FragmentLengthCrossCoverage,ChIPQCsample-method	FragmentLengthCrossCoverage-methods
FragmentLengthCrossCoverage,list-method	FragmentLengthCrossCoverage-methods
FragmentLengthCrossCoverage-methods	FragmentLengthCrossCoverage-methods
frip	frip-methods
frip,ChIPQCexperiment-method	frip-methods
frip,ChIPQCsample-method	frip-methods
frip,list-method	frip-methods
frip-methods	frip-methods
mapped	mapped-methods
mapped,ChIPQCexperiment-method	mapped-methods
mapped,ChIPQCsample-method	mapped-methods
mapped,list-method	mapped-methods
mapped-methods	mapped-methods
Normalisedaveragepeaksignal	Normalisedaveragepeaksignal-methods
Normalisedaveragepeaksignal,ChIPQCexperiment-method	Normalisedaveragepeaksignal-methods
Normalisedaveragepeaksignal,ChIPQCsample-method	Normalisedaveragepeaksignal-methods
Normalisedaveragepeaksignal,list-method	Normalisedaveragepeaksignal-methods
Normalisedaveragepeaksignal-methods	Normalisedaveragepeaksignal-methods
peaks	peaks-methods
peaks,ChIPQCexperiment-method	peaks-methods
peaks,ChIPQCsample-method	peaks-methods
peaks,list-method	peaks-methods
peaks-methods	peaks-methods
plotCC	plotCC-methods
plotCC,ChIPQCexperiment-method	plotCC-methods
plotCC,ChIPQCsample-method	plotCC-methods
plotCC,list-method	plotCC-methods
plotCC-methods	plotCC-methods
plotCorHeatmap	plotCorHeatmap-methods
plotCorHeatmap,ChIPQCexperiment-method	plotCorHeatmap-methods
plotCorHeatmap-methods	plotCorHeatmap-methods
plotCoverageHist	plotCoverageHist-methods
plotCoverageHist,ChIPQCexperiment-method	plotCoverageHist-methods
plotCoverageHist,ChIPQCsample-method	plotCoverageHist-methods
plotCoverageHist,list-method	plotCoverageHist-methods
plotCoverageHist-methods	plotCoverageHist-methods
plotFribl	plotFribl-methods
plotFribl,ChIPQCexperiment-method	plotFribl-methods
plotFribl,ChIPQCsample-method	plotFribl-methods
plotFribl,list-method	plotFribl-methods
plotFribl-methods	plotFribl-methods
plotFrip	plotFrip-methods
plotFrip,ChIPQCexperiment-method	plotFrip-methods
plotFrip,ChIPQCsample-method	plotFrip-methods
plotFrip,list-method	plotFrip-methods
plotFrip-methods	plotFrip-methods
plotPeakProfile	plotPeakProfile-methods
plotPeakProfile,ChIPQCexperiment-method	plotPeakProfile-methods
plotPeakProfile,ChIPQCsample-method	plotPeakProfile-methods
plotPeakProfile,list-method	plotPeakProfile-methods
plotPeakProfile-methods	plotPeakProfile-methods
plotPrincomp	plotPrincomp-methods
plotPrincomp,ChIPQCexperiment-method	plotPrincomp-methods
plotPrincomp-methods	plotPrincomp-methods
plotRap	plotRap-methods
plotRap,ChIPQCexperiment-method	plotRap-methods
plotRap,ChIPQCsample-method	plotRap-methods
plotRap,list-method	plotRap-methods
plotRap-methods	plotRap-methods
plotRegi	plotRegi-methods
plotRegi,ChIPQCexperiment-method	plotRegi-methods
plotRegi,ChIPQCsample-method	plotRegi-methods
plotRegi,list-method	plotRegi-methods
plotRegi-methods	plotRegi-methods
plotSSD	plotSSD-methods
plotSSD,ChIPQCexperiment-method	plotSSD-methods
plotSSD,ChIPQCsample-method	plotSSD-methods
plotSSD,list-method	plotSSD-methods
plotSSD-methods	plotSSD-methods
QCannotation	QCannotation-methods
QCannotation,ChIPQCexperiment-method	QCannotation-methods
QCannotation-methods	QCannotation-methods
QCcontrol	QCcontrol-methods
QCcontrol,ChIPQCexperiment-method	QCcontrol-methods
QCcontrol-methods	QCcontrol-methods
QCdba	QCdba-methods
QCdba,ChIPQCexperiment-method	QCdba-methods
QCdba-methods	QCdba-methods
QCmetadata	QCmetadata-methods
QCmetadata,ChIPQCexperiment-method	QCmetadata-methods
QCmetadata,list-method	QCmetadata-methods
QCmetadata-methods	QCmetadata-methods
QCmetrics	QCmetrics-methods
QCmetrics,ChIPQCexperiment-method	QCmetrics-methods
QCmetrics,ChIPQCsample-method	QCmetrics-methods
QCmetrics,list-method	QCmetrics-methods
QCmetrics-methods	QCmetrics-methods
QCsample	QCsample-methods
QCsample,ChIPQCexperiment-method	QCsample-methods
QCsample-methods	QCsample-methods
readlength	readlength-methods
readlength,ChIPQCexperiment-method	readlength-methods
readlength,ChIPQCsample-method	readlength-methods
readlength,list-method	readlength-methods
readlength-methods	readlength-methods
ReadLengthCrossCoverage	ReadLengthCrossCoverage-methods
ReadLengthCrossCoverage,ChIPQCexperiment-method	ReadLengthCrossCoverage-methods
ReadLengthCrossCoverage,ChIPQCsample-method	ReadLengthCrossCoverage-methods
ReadLengthCrossCoverage,list-method	ReadLengthCrossCoverage-methods
ReadLengthCrossCoverage-methods	ReadLengthCrossCoverage-methods
reads	reads-methods
reads,ChIPQCexperiment-method	reads-methods
reads,ChIPQCsample-method	reads-methods
reads,list-method	reads-methods
reads-methods	reads-methods
regi	regi-methods
regi,ChIPQCexperiment-method	regi-methods
regi,ChIPQCsample-method	regi-methods
regi,list-method	regi-methods
regi-methods	regi-methods
RelativeCrossCoverage	RelativeCrossCoverage-methods
RelativeCrossCoverage,ChIPQCexperiment-method	RelativeCrossCoverage-methods
RelativeCrossCoverage,ChIPQCsample-method	RelativeCrossCoverage-methods
RelativeCrossCoverage,list-method	RelativeCrossCoverage-methods
RelativeCrossCoverage-methods	RelativeCrossCoverage-methods
ribl	ribl-methods
ribl,ChIPQCexperiment-method	ribl-methods
ribl,ChIPQCsample-method	ribl-methods
ribl,list-method	ribl-methods
ribl-methods	ribl-methods
rip	rip-methods
rip,ChIPQCexperiment-method	rip-methods
rip,ChIPQCsample-method	rip-methods
rip,list-method	rip-methods
rip-methods	rip-methods
show,ChIPQCexperiment-method	ChIPQCexperiment-class
show,ChIPQCsample-method	ChIPQCsample-class
ssd	ssd-methods
ssd,ChIPQCexperiment-method	ssd-methods
ssd,ChIPQCsample-method	ssd-methods
ssd,list-method	ssd-methods
ssd-methods	ssd-methods
tamoxifen_QC	ChIPQC-data
