chimeraviz-package	chimeraviz
.fusions_to_gene_label_data	chimeraviz-internals-fusions_to_gene_label_data
.fusions_to_link_data	chimeraviz-internals-fusions_to_link_data
.scale_list_to_interval	chimeraviz-internals-scaleListToInterval
add_fusion_reads_alignment	add_fusion_reads_alignment
chimeraviz	chimeraviz
chimeraviz-internals-fusions_to_gene_label_data	chimeraviz-internals-fusions_to_gene_label_data
chimeraviz-internals-fusions_to_link_data	chimeraviz-internals-fusions_to_link_data
chimeraviz-internals-scaleListToInterval	chimeraviz-internals-scaleListToInterval
create_fusion_report	create_fusion_report
decide_transcript_category	decide_transcript_category
downstream_partner_gene	downstream_partner_gene
downstream_partner_gene,Fusion-method	downstream_partner_gene
downstream_partner_gene<-	downstream_partner_gene
downstream_partner_gene<-,Fusion-method	downstream_partner_gene
down_shift	down_shift
fetch_reads_from_fastq	fetch_reads_from_fastq
Fusion	Fusion-class
Fusion-class	Fusion-class
fusion_spanning_reads_count	fusion_spanning_reads_count
fusion_spanning_reads_count,Fusion-method	fusion_spanning_reads_count
fusion_split_reads_count	fusion_split_reads_count
fusion_split_reads_count,Fusion-method	fusion_split_reads_count
fusion_to_data_frame	fusion_to_data_frame
get_ensembl_ids	get_ensembl_ids
get_fusion_by_chromosome	get_fusion_by_chromosome
get_fusion_by_gene_name	get_fusion_by_gene_name
get_fusion_by_id	get_fusion_by_id
get_transcripts_ensembl_db	get_transcripts_ensembl_db
import_defuse	import_defuse
import_ericscript	import_ericscript
import_function_non_ucsc	import_function_non_ucsc
import_fusioncatcher	import_fusioncatcher
import_fusionmap	import_fusionmap
import_infusion	import_infusion
import_jaffa	import_jaffa
import_oncofuse	import_oncofuse
import_prada	import_prada
import_soapfuse	import_soapfuse
import_starfusion	import_starfusion
PartnerGene	PartnerGene-class
PartnerGene-class	PartnerGene-class
partner_gene_ensembl_id	partner_gene_ensembl_id
partner_gene_ensembl_id,PartnerGene-method	partner_gene_ensembl_id
partner_gene_ensembl_id<-	partner_gene_ensembl_id
partner_gene_ensembl_id<-,PartnerGene-method	partner_gene_ensembl_id
partner_gene_junction_sequence	partner_gene_junction_sequence
partner_gene_junction_sequence,PartnerGene-method	partner_gene_junction_sequence
plot_circle	plot_circle
plot_fusion	plot_fusion
plot_fusion_reads	plot_fusion_reads
plot_fusion_separate	plot_fusion
plot_fusion_together	plot_fusion
plot_fusion_transcript	plot_fusion_transcript
plot_fusion_transcripts_graph	plot_fusion_transcripts_graph
plot_fusion_transcript_with_protein_domain	plot_fusion_transcript_with_protein_domain
plot_transcripts	plot_transcripts
raw_cytobandhg19	raw_cytobandhg19
raw_cytobandhg38	raw_cytobandhg38
raw_defuse	raw_defuse
raw_ericscript	raw_ericscript
raw_fusion5267proteindomains	raw_fusion5267proteindomains
raw_fusion5267reads	raw_fusion5267reads
raw_fusion5267readsBedGraph	raw_fusion5267readsBedGraph
raw_fusioncatcher	raw_fusioncatcher
raw_fusionmap	raw_fusionmap
raw_Homo_sapiens.GRCh37.74	raw_Homo_sapiens.GRCh37.74
raw_infusion	raw_infusion
raw_jaffa	raw_jaffa
raw_oncofuse	raw_oncofuse
raw_prada	raw_prada
raw_soapfuse	raw_soapfuse
raw_starfusion	raw_starfusion
select_transcript	select_transcript
show,Fusion-method	show-Fusion-method
show,PartnerGene-method	show-PartnerGene-method
split_on_utr_and_add_feature	split_on_utr_and_add_feature
upstream_partner_gene	upstream_partner_gene
upstream_partner_gene,Fusion-method	upstream_partner_gene
upstream_partner_gene<-	upstream_partner_gene
upstream_partner_gene<-,Fusion-method	upstream_partner_gene
write_fusion_reference	write_fusion_reference
