# A description of example files in this package.

## txt files in inst/extdata/groups_picard

This folder contains txt files from four cohorts. i.e. cohort_1, _2, _3 and _4. 
All of the txt files were generated by the `collectInsertSize` tool in PICARD 
tools using cfDNA shallow whole genome sequencing of human blood samples 
as input.  

The sequencing data used as example here was published in this paper 
by Mouliere et al 2018: https://stm.sciencemag.org/content/10/466/eaat4921  

Sequencing data for this study are deposited in the EGA database 
 (accession number EGAS00001003258).

## txt files in inst/extdata/step6/example

This folder contains one txt files were generated by the `collectInsertSize` 
tool in PICARD tools using cfDNA shallow whole genome sequencing of blood 
sample as input.  

The sequencing data used as example here was published in this paper 
by  Mouliere et al 2018: https://stm.sciencemag.org/content/10/466/eaat4921  

Sequencing data for this study are deposited in the EGA
database (accession number EGAS00001003258).