# Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure

## Documentation for package ‘cellTree’ version 1.22.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

cellTree-package | Inference and visualisation of Single-Cell RNA-seq Data data as a hierarchical tree structure
cell.ordering.table | Ranking of cells according to backbone tree structure
cellTree | Inference and visualisation of Single-Cell RNA-seq Data data as a hierarchical tree structure
compute.backbone.tree | Backbone Tree construction
compute.go.enrichment | Gene Ontology enrichment analysis
compute.lda | LDA model inference
ct.plot.go.dag | Gene Ontology enrichment sets plotting
ct.plot.grouping | Plot cell tree with grouping information
ct.plot.heatmap | Gene Expression Heatmap
ct.plot.topics | Plot cell tree with topic distributions
get.cell.dists | Cell Pairwise-Distance Matrix
go.results.to.latex | LaTeX output for Gene Ontology Enrichment results
HSMM_lda_model | Pre-computed LDA model for HSMMSingleCell data