{% set version = "1.8.0" %}
{% set name = "celaref" %}
{% set bioc = "3.12" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: 170a2abb32df21001cf3e0db69d614a2
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: limma, parallel, knitr, rmarkdown, ExperimentHub, testthat
requirements:
  host:
    - 'bioconductor-biocgenerics >=0.36.0,<0.37.0'
    - 'bioconductor-delayedarray >=0.16.0,<0.17.0'
    - 'bioconductor-mast >=1.16.0,<1.17.0'
    - 'bioconductor-s4vectors >=0.28.0,<0.29.0'
    - 'bioconductor-summarizedexperiment >=1.20.0,<1.21.0'
    - r-base
    - r-dplyr
    - r-ggplot2
    - r-magrittr
    - r-matrix
    - r-readr
    - r-rlang
    - r-tibble
  run:
    - 'bioconductor-biocgenerics >=0.36.0,<0.37.0'
    - 'bioconductor-delayedarray >=0.16.0,<0.17.0'
    - 'bioconductor-mast >=1.16.0,<1.17.0'
    - 'bioconductor-s4vectors >=0.28.0,<0.29.0'
    - 'bioconductor-summarizedexperiment >=1.20.0,<1.21.0'
    - r-base
    - r-dplyr
    - r-ggplot2
    - r-magrittr
    - r-matrix
    - r-readr
    - r-rlang
    - r-tibble
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: GPL-3
  summary: 'Single-cell RNAseq cell cluster labelling by reference'
  description: 'After the clustering step of a single-cell RNAseq experiment, this package aims to suggest labels/cell types for the clusters, on the basis of similarity to a reference dataset. It requires a table of read counts per cell per gene, and a list of the cells belonging to each of the clusters, (for both test and reference data).'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

