# Clustering Deviation Index (CDI)

## Documentation for package ‘CDI’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

calculate_CDI | Clustering Deviance Index (CDI)
CDI | Clustering Deviation Index.
CDI_lineplot | Visualize CDI values via a lineplot
contingency_heatmap | Heatmap of contingency table
feature_gene_selection | Select feature genes
one_batch_matrix | Simulated count matrix from one batch
one_batch_matrix_celltype | Cell type labels of simulated count matrix from one batch
one_batch_matrix_label_df | Clustering labels for simulated one-batch single-cell count matrix
size_factor | Size factor of each cell
two_batch_matrix | Simulated count matrix from two batches
two_batch_matrix_batch | Batch labels of simulated count matrix from two batches
two_batch_matrix_celltype | Cell type labels of simulated count matrix from two batches
two_batch_matrix_label_df | Clustering labels for simulated two-batch single-cell count matrix