Package: CBNplot
Type: Package
Title: plot bayesian network inferred from gene expression data based
        on enrichment analysis results
Version: 1.0.0
Authors@R: person("Noriaki", "Sato", email = "nori@hgc.jp", role = c("cre", "aut"))
Description: This package provides the visualization of bayesian network inferred from gene expression data. The networks are based on enrichment analysis results inferred from packages including clusterProfiler and ReactomePA. The networks between pathways and genes inside the pathways can be inferred and visualized.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.3.0)
Imports: ggplot2, magrittr, graphite, ggraph, igraph, bnlearn (>= 4.7),
        patchwork, org.Hs.eg.db, clusterProfiler, utils, enrichplot,
        reshape2, ggforce, dplyr, tidyr, stringr, depmap,
        ExperimentHub, Rmpfr, graphlayouts, BiocFileCache, ggdist,
        purrr, pvclust, stats, rlang, oaqc
Suggests: knitr, arules, concaveman, ReactomePA, bnviewer, DESeq2,
        GEOquery, rmarkdown, withr, BiocStyle, testthat (>= 3.0.0)
biocViews: Visualization, Bayesian, GeneExpression, NetworkInference,
        Pathways, Reactome, Network, NetworkEnrichment,
        GeneSetEnrichment
VignetteBuilder: knitr
RoxygenNote: 7.2.3
URL: https://github.com/noriakis/CBNplot
BugReports: https://github.com/noriakis/CBNplot/issues
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/CBNplot
git_branch: RELEASE_3_17
git_last_commit: eee8d87
git_last_commit_date: 2023-04-25
Date/Publication: 2023-04-25
NeedsCompilation: no
Packaged: 2023-04-25 20:30:02 UTC; biocbuild
Author: Noriaki Sato [cre, aut]
Maintainer: Noriaki Sato <nori@hgc.jp>
Built: R 4.3.1; ; 2023-07-20 06:52:05 UTC; unix
