aggregateFeatureMatrix	aggregateFeatureMatrix
aggregateGeneExpression	aggregateGeneExpression
annotateGeneAsVector	annotateGeneAsVector
annotateGenesByGeneSet	annotateGenesByGeneSet
annotateLRInteractionCounts	annotateLRInteractionCounts
cellTypesPerCellTypeGraphFromCellMatrix	cellTypesPerCellTypeGraphFromCellMatrix
cellTypesPerCellTypeGraphFromNbhdMatrix	cellTypesPerCellTypeGraphFromNbhdMatrix
collapseExtendedNBHDs	collapseExtendedNBHDs
combinatorialSpheres	combinatorialSpheres
computeCellTypesPerCellTypeMatrix	computeCellTypesPerCellTypeMatrix
computeEdgeGraph	computeEdgeGraph
computeEdgeObject	computeEdgeObject
computeGraphEmbedding	computeGraphEmbedding
computeMoransI	computeMoransI
computeNBHDByCTMatrix	computeNBHDByCTMatrix
computeNBHDVsCTObject	computeNBHDVsCTObject
computeNeighbourEnrichment	computeNeighbourEnrichment
computeNeighboursDelaunay	computeNeighboursDelaunay
computeNeighboursEuclidean	computeNeighboursEuclidean
countLRInteractionsPerCell	countLRInteractionsPerCell
cullEdges	cullEdges
desymmetriseNN	desymmetriseNN
directedHausdorfDistance	directedHausdorfDistance
edgeCutoffsByClustering	edgeCutoffsByClustering
edgeCutoffsByPercentile	edgeCutoffsByPercentile
edgeCutoffsByWatershed	edgeCutoffsByWatershed
edgeCutoffsByZScore	edgeCutoffsByZScore
edgeLengthPlot	edgeLengthPlot
edgeLengthsAndCellTypePairs	edgeLengthsAndCellTypePairs
exampleObjects	exampleObjects
exSeuratObj	exSeuratObj
geneSetsVsGeneClustersPValueMatrix	geneSetsVsGeneClustersPValueMatrix
getAverageExpressionDF	getAverageExpressionDF
getAverageExpressionMatrix	getAverageExpressionMatrix
getBinarisedMatrix	getBinarisedMatrix
getClusterOrder	getClusterOrder
getExtendedNBHDs	getExtendedNBHDs
getFeatureZScores	getFeatureZScores
getGeneClusterAveragesPerCell	getGeneClusterAveragesPerCell
getGeneNeighbors	getGeneNeighbors
getInteractionsOnEdges	getInteractionsOnEdges
getLigandReceptorNetwork	getLigandReceptorNetwork
getLigandReceptorPairsInPanel	getLigandReceptorPairsInPanel
getNearbyGenes	getNearbyGenes
getNearestNeighbourLists	getNearestNeighbourLists
getObjectSubsetClusteringPValue	getObjectSubsetClusteringPValue
getObjectSubsetClusteringStatistics	getObjectSubsetClusteringStatistics
humanLRN	humanLRN
ligandReceptorResults	ligandReceptorResults
make.getExample	make.getExample
makeLRInteractionHeatmap	makeLRInteractionHeatmap
makeSummedLRInteractionHeatmap	makeSummedLRInteractionHeatmap
meanGeneClusterOnCellUMAP	meanGeneClusterOnCellUMAP
meanZPerCluster	meanZPerCluster
meanZPerClusterOnUMAP	meanZPerClusterOnUMAP
medianComplementDistance	medianComplementDistance
medianComplementPValue	medianComplementPValue
moransI	moransI
moransILigandReceptor	moransILigandReceptor
mouseLRN	mouseLRN
nbhdsAsEdgesToNbhdsAsList	nbhdsAsEdgesToNbhdsAsList
neighbourhoodDiameter	neighbourhoodDiameter
orderGeneSetPValues	orderGeneSetPValues
performLigandReceptorAnalysis	performLigandReceptorAnalysis
permuteMatrix	permuteMatrix
predictAnnotation	predictAnnotation
predictAnnotationAllGenes	predictAnnotationAllGenes
predictGeneAnnotationImpl	predictGeneAnnotationImpl
randomiseGraph	randomiseGraph
randomiseNodeIndices	randomiseNodeIndices
readGmt	readGmt
runGeometricClusteringTrials	runGeometricClusteringTrials
runMoransI	runMoransI
sankeyFromMatrix	sankeyFromMatrix
seuratCells	seuratCells
seuratGenes	seuratGenes
smallXenium	smallXenium
stripGeneSet	stripGeneSet
symmetriseNN	symmetriseNN
symmetryCheckNN	symmetryCheckNN
tagRowAndColNames	tagRowAndColNames
transposeObject	transposeObject
xeniumCells	xeniumCells
