adaptSpillmat	adaptSpillmat
applyCutoffs	applyCutoffs
assignPrelim	assignPrelim
channels	SCE-accessors
channels,SingleCellExperiment-method	SCE-accessors
clrDR	clrDR
cluster	cluster
cluster_codes	SCE-accessors
cluster_codes,SingleCellExperiment-method	SCE-accessors
cluster_ids	SCE-accessors
cluster_ids,SingleCellExperiment,character-method	SCE-accessors
cluster_ids,SingleCellExperiment,missing-method	SCE-accessors
compCytof	compCytof
computeSpillmat	computeSpillmat
data	data
delta_area	SCE-accessors
delta_area,SingleCellExperiment-method	SCE-accessors
ei	SCE-accessors
ei,SingleCellExperiment-method	SCE-accessors
estCutoffs	estCutoffs
extractClusters	extractClusters
filterSCE	filterSCE
guessPanel	guessPanel
isotope_list	data
marker_classes	SCE-accessors
marker_classes,SingleCellExperiment-method	SCE-accessors
mergeClusters	mergeClusters
merging_table	data
mp_cells	data
normCytof	normCytof
n_cells	SCE-accessors
n_cells,SingleCellExperiment-method	SCE-accessors
PBMC_fs	data
PBMC_md	data
PBMC_panel	data
pbMDS	pbMDS
plotAbundances	plotAbundances
plotClusterExprs	plotClusterExprs
plotCodes	plotCodes
plotCounts	plotCounts
plotDiffHeatmap	plotDiffHeatmap
plotDR	plotDR
plotEvents	plotEvents
plotExprHeatmap	plotExprHeatmap
plotExprs	plotExprs
plotFreqHeatmap	plotFreqHeatmap
plotMahal	plotMahal
plotMultiHeatmap	plotMultiHeatmap
plotNRS	plotNRS
plotPbExprs	plotPbExprs
plotScatter	plotScatter
plotSpillmat	plotSpillmat
plotYields	plotYields
prepData	prepData
raw_data	data
runDR	runDR
sample_ff	data
sample_ids	SCE-accessors
sample_ids,SingleCellExperiment-method	SCE-accessors
sample_key	data
SCE-accessors	SCE-accessors
sce2fcs	sce2fcs
ss_exp	data
state_markers	SCE-accessors
state_markers,SingleCellExperiment-method	SCE-accessors
type_markers	SCE-accessors
type_markers,SingleCellExperiment-method	SCE-accessors
