Package: CAMTHC
Type: Package
Title: Convex Analysis of Mixtures for Tissue Heterogeneity
        Characterization
Version: 1.2.0
Author: Lulu Chen <luluchen@vt.edu>
Maintainer: Lulu Chen <luluchen@vt.edu>
biocViews: Software, CellBiology, GeneExpression
Description: An R package for tissue heterogeneity characterization by convex 
    analysis of mixtures (CAM). It provides basic functions to perform 
    unsupervised deconvolution on mixture expression profiles by CAM and some 
    auxiliary functions to help understand the subpopulation-specific results. 
    It also implements functions to perform supervised deconvolution based on 
    prior knowledge of molecular markers, S matrix or A matrix. Combining 
    molecular markers from CAM and from prior knowledge can achieve 
    semi-supervised deconvolution of mixtures.
License: GPL-2
Encoding: UTF-8
RoxygenNote: 6.0.1
Depends: R (>= 3.5)
Suggests: knitr, rmarkdown, BiocStyle, testthat, GEOquery, rgl
VignetteBuilder: knitr
Imports: methods, rJava, BiocParallel, stats, Biobase,
        SummarizedExperiment, corpcor, geometry, NMF, nnls, DMwR,
        pcaPP, apcluster, graphics
SystemRequirements: Java (>= 1.8)
BugReports: https://github.com/Lululuella/CAMTHC/issues
git_url: https://git.bioconductor.org/packages/CAMTHC
git_branch: RELEASE_3_9
git_last_commit: 10329e2
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: no
Packaged: 2019-05-03 03:11:00 UTC; biocbuild
Built: R 3.6.1; ; 2019-08-04 15:15:03 UTC; unix
