annotateNearest	annotateNearest
annotateTranscripts	annotateTranscripts
boundedClusterMaker	clusterMaker
bumphunter	bumphunter
bumphunter,matrix-method	bumphunter
bumphunter-methods	bumphunter
bumphunterEngine	bumphunter
clusterMaker	clusterMaker
dummyData	dummyData
getSegments	getSegments
locfitByCluster	locfitByCluster
loessByCluster	loessByCluster
matchGenes	matchGenes
print.bumps	bumphunter
regionFinder	regionFinder
runmedByCluster	runmedByCluster
smoother	smoother
TT	TT
