exonsToIntrons	exonsToIntrons
getBranchpointSequence	getBranchpointSequence
getCanonical3SS	getCanonical3SS
getExonDists	getExonDists
getPPT	getPPT
getQueryLoc	getQueryLoc
gtfToExons	gtfToExons
makeBranchpointWindowForExons	makeBranchpointWindowForExons
makeBranchpointWindowForSNP	makeBranchpointWindowForSNP
plotBranchpointWindow	plotBranchpointWindow
plotStructure	plotStructure
predictBranchpoints	predictBranchpoints
predictionsToSummary	predictionsToSummary
readQueryFile	readQueryFile
