Package: BrainSABER
Type: Package
Title: Brain Span Atlas in Biobase Expressionset R toolset
Version: 1.8.0
Authors@R: c(person("Carrie","Minette",
                  email="carrie.minette@coyotes.usd.edu",
                  role="aut"),
           person("Evgeni","Radichev",
                  email="evgeni.radichev@usd.edu",
                  role="aut"),
           person("USD","Biomedical Engineering",
                  email="bicbioeng@gmail.com",
                  role=c("aut","cre")))
Description: The Allen Institute for Brain Science provides an 
    RNA sequencing (RNA-Seq) data resource for studying 
    transcriptional mechanisms involved in human brain 
    development known as BrainSpan. BrainSABER is an R package that facilitates 
    comparison of user data with the various developmental stages and brain 
    structures found in the BrainSpan atlas by generating dynamic similarity 
    heatmaps for the two data sets. It also provides a self-validating container
    for user data.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.1.0), biomaRt, SummarizedExperiment
Imports: data.table, lsa, methods, S4Vectors, utils, BiocFileCache,
        shiny
RoxygenNote: 7.1.1
biocViews: GeneExpression, Visualization, Sequencing
VignetteBuilder: knitr
Suggests: BiocStyle, ComplexHeatmap, fastcluster, heatmaply, knitr,
        plotly, rmarkdown
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/BrainSABER
git_branch: RELEASE_3_16
git_last_commit: 263677f
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: no
Packaged: 2022-11-01 21:01:25 UTC; biocbuild
Author: Carrie Minette [aut],
  Evgeni Radichev [aut],
  USD Biomedical Engineering [aut, cre]
Maintainer: USD Biomedical Engineering <bicbioeng@gmail.com>
Built: R 4.2.2; ; 2022-11-07 23:44:41 UTC; unix
