# BLMA: A package for bi-level meta-analysis

## Documentation for package ‘BLMA’ version 1.14.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

addCLT | The additive method for meta-analysis
bilevelAnalysisClassic | Bi-level meta-analysis in conjunction with a classical hypothesis testing method
bilevelAnalysisGene | Bi-level meta-analysis of multiple expression datasets at the gene-level
bilevelAnalysisGeneset | Bi-level meta-analysis - applied to geneset enrichment analysis
bilevelAnalysisPathway | Bi-level meta-analysis - applied to pathway analysis
data_GSE17054 | Gene expression dataset GSE17054 from Majeti et al.
data_GSE33223 | Gene expression dataset GSE33223 from Bacher et al.
data_GSE42140 | The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
data_GSE57194 | Gene expression dataset GSE57194 from Abdul-Nabi et al.
fisherMethod | Fisher's method for meta-analysis
getStatistics | Intergrative genes statistic
group_GSE17054 | Gene expression dataset GSE17054 from Majeti et al.
group_GSE33223 | Gene expression dataset GSE33223 from Bacher et al.
group_GSE42140 | The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
group_GSE57194 | Gene expression dataset GSE57194 from Abdul-Nabi et al.
GSE17054 | Gene expression dataset GSE17054 from Majeti et al.
GSE33223 | Gene expression dataset GSE33223 from Bacher et al.
GSE42140 | The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
GSE57194 | Gene expression dataset GSE57194 from Abdul-Nabi et al.
intraAnalysisClassic | Intra-experiment analysis in conjunction with classical hypothesis tests
intraAnalysisGene | Intra-experiment analysis of an expression dataset at the gene-level
loadKEGGPathways | Load KEGG pathways and names
pORACalc | Over-representation Analysis
stoufferMethod | Stouffer's method for meta-analysis