Package: BgeeCall
Type: Package
Title: Automatic RNA-Seq present/absent gene expression calls
        generation
Version: 1.6.0
Date: 2020-06
Authors@R: 
	c(person("Julien", "Wollbrett", 
		role = c("aut", "cre"), 
		email = "julien.wollbrett@unil.ch"),
    person("Julien", "Roux", role = "aut"),
    person("Sara", "Fonseca Costa", role = "ctb"),
    person("Marc", "Robinson Rechavi", role = "ctb"),
    person("Frederic", "Bastian", role = "aut"))
Description: BgeeCall allows to generate present/absent gene expression calls without using an arbitrary cutoff like TPM<1. 
    Calls are generated based on reference intergenic sequences. These sequences are generated based on expression of all RNA-Seq 
    libraries of each species integrated in Bgee (https://bgee.org).
Depends: R (>= 3.6)
Imports: GenomicFeatures, rhdf5, tximport, Biostrings, rtracklayer,
        biomaRt, jsonlite, methods, grDevices, graphics, stats, utils,
        rslurm
License: GPL-3
URL: https://github.com/BgeeDB/BgeeCall
BugReports: https://github.com/BgeeDB/BgeeCall/issues
VignetteBuilder: knitr
biocViews: Software, GeneExpression, RNASeq
Suggests: knitr, testthat, rmarkdown, AnnotationHub, httr
RoxygenNote: 7.1.0
Encoding: UTF-8
NeedsCompilation: no
SystemRequirements: kallisto
git_url: https://git.bioconductor.org/packages/BgeeCall
git_branch: RELEASE_3_12
git_last_commit: 5c2bc6d
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
Packaged: 2020-10-27 22:41:08 UTC; biocbuild
Author: Julien Wollbrett [aut, cre],
  Julien Roux [aut],
  Sara Fonseca Costa [ctb],
  Marc Robinson Rechavi [ctb],
  Frederic Bastian [aut]
Maintainer: Julien Wollbrett <julien.wollbrett@unil.ch>
Built: R 4.0.3; ; 2020-10-31 20:54:27 UTC; unix
