# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Sat Oct 31 11:54:30 2020
# ------------------------------------------------

package:
    name: bioconductor-batchqc
    version: 1.18.0
source:
    md5: 0c8a7e36e6f12adfcedaede74344d8b6
    url:
        - https://bioarchive.galaxyproject.org/BatchQC_1.18.0.tar.gz
        - https://bioconductor.org/packages/3.12/bioc/src/contrib/BatchQC_1.18.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-batchqc/bioconductor-batchqc_1.18.0_src_all.tar.gz
build:
    noarch: generic
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r40_0
requirements:
    host:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 1_gnu
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.35 h18a2f87_9
        - binutils_linux-64 2.35 hc3fd857_29
        - bioconductor-annotate 1.68.0 r40_0
        - bioconductor-annotationdbi 1.52.0 r40_0
        - bioconductor-biobase 2.50.0 r40h037d062_0
        - bioconductor-biocgenerics 0.36.0 r40_0
        - bioconductor-biocparallel 1.24.0 r40h5f743cb_0
        - bioconductor-edger 3.32.0 r40h5f743cb_0
        - bioconductor-genefilter 1.72.0 r40hc6cf775_0
        - bioconductor-iranges 2.24.0 r40h037d062_0
        - bioconductor-limma 3.46.0 r40h037d062_0
        - bioconductor-s4vectors 0.28.0 r40h037d062_0
        - bioconductor-sva 3.38.0 r40h037d062_0
        - bwidget 1.9.14 0
        - bzip2 1.0.8 h516909a_3
        - c-ares 1.16.1 h516909a_3
        - ca-certificates 2020.6.20 hecda079_0
        - cairo 1.16.0 h488836b_1006
        - curl 7.71.1 he644dc0_8
        - fontconfig 2.13.1 h1056068_1002
        - freetype 2.10.4 he06d7ca_0
        - fribidi 1.0.10 h516909a_0
        - gcc_impl_linux-64 7.5.0 hda68d29_13
        - gcc_linux-64 7.5.0 he2a3fca_29
        - gettext 0.19.8.1 hf34092f_1004
        - gfortran_impl_linux-64 7.5.0 hfca37b7_17
        - gfortran_linux-64 7.5.0 ha081f1e_29
        - graphite2 1.3.13 he1b5a44_1001
        - gsl 2.6 h294904e_0
        - gxx_impl_linux-64 7.5.0 h64c220c_13
        - gxx_linux-64 7.5.0 h547f3ba_29
        - harfbuzz 2.7.2 hb1ce69c_1
        - icu 67.1 he1b5a44_0
        - jpeg 9d h516909a_0
        - kernel-headers_linux-64 2.6.32 h77966d4_13
        - krb5 1.17.1 hfafb76e_3
        - ld_impl_linux-64 2.35 h769bd43_9
        - libblas 3.8.0 17_openblas
        - libcblas 3.8.0 17_openblas
        - libcurl 7.71.1 hcdd3856_8
        - libedit 3.1.20191231 he28a2e2_2
        - libev 4.33 h516909a_1
        - libffi 3.2.1 he1b5a44_1007
        - libgcc-ng 9.3.0 h5dbcf3e_17
        - libgfortran-ng 7.5.0 hae1eefd_17
        - libgfortran4 7.5.0 hae1eefd_17
        - libglib 2.66.2 h0dae87d_0
        - libgomp 9.3.0 h5dbcf3e_17
        - libiconv 1.16 h516909a_0
        - liblapack 3.8.0 17_openblas
        - libnghttp2 1.41.0 h8cfc5f6_2
        - libopenblas 0.3.10 pthreads_hb3c22a3_5
        - libpng 1.6.37 hed695b0_2
        - libssh2 1.9.0 hab1572f_5
        - libstdcxx-ng 9.3.0 h2ae2ef3_17
        - libtiff 4.1.0 hc7e4089_6
        - libuuid 2.32.1 h14c3975_1000
        - libwebp-base 1.1.0 h516909a_3
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.10 h68273f3_2
        - lz4-c 1.9.2 he1b5a44_3
        - make 4.3 hd18ef5c_1
        - ncurses 6.2 he1b5a44_2
        - openssl 1.1.1h h516909a_0
        - pandoc 2.11.0.4 hd18ef5c_0
        - pango 1.42.4 h80147aa_5
        - pcre 8.44 he1b5a44_0
        - pcre2 10.35 h2f06484_0
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - r-askpass 1.1 r40hcdcec82_2
        - r-assertthat 0.2.1 r40h6115d3f_2
        - r-backports 1.1.10 r40hcdcec82_0
        - r-base 4.0.3 hd272fe0_2
        - r-base64enc 0.1_3 r40hcdcec82_1004
        - r-bh 1.72.0_3 r40h6115d3f_1
        - r-bit 4.0.4 r40hcdcec82_0
        - r-bit64 4.0.5 r40hcdcec82_0
        - r-bitops 1.0_6 r40hcdcec82_1004
        - r-blob 1.2.1 r40h6115d3f_1
        - r-callr 3.5.1 r40h142f84f_0
        - r-catools 1.18.0 r40h0357c0b_1
        - r-cli 2.1.0 r40h142f84f_0
        - r-cluster 2.1.0 r40h31ca83e_4
        - r-coda 0.19_4 r40h142f84f_0
        - r-codetools 0.2_17 r40h142f84f_0
        - r-colorspace 1.4_1 r40hcdcec82_2
        - r-commonmark 1.7 r40hcdcec82_1002
        - r-conquer 1.0.2 r40hed939d5_1
        - r-corpcor 1.6.9 r40h6115d3f_1003
        - r-crayon 1.3.4 r40h6115d3f_1003
        - r-crosstalk 1.1.0.1 r40h6115d3f_1
        - r-curl 4.3 r40hcdcec82_1
        - r-data.table 1.13.2 r40h0eb13af_0
        - r-dbi 1.1.0 r40h6115d3f_1
        - r-dendextend 1.14.0 r40h6115d3f_0
        - r-desc 1.2.0 r40h6115d3f_1003
        - r-digest 0.6.27 r40h1b71b39_0
        - r-dplyr 1.0.2 r40h0357c0b_0
        - r-egg 0.4.5 r40h6115d3f_2
        - r-ellipsis 0.3.1 r40hcdcec82_0
        - r-evaluate 0.14 r40h6115d3f_2
        - r-fansi 0.4.1 r40hcdcec82_1
        - r-farver 2.0.3 r40h0357c0b_1
        - r-fastmap 1.0.1 r40h0357c0b_1
        - r-foreach 1.5.1 r40h142f84f_0
        - r-formatr 1.7 r40h6115d3f_2
        - r-futile.logger 1.4.3 r40h6115d3f_1003
        - r-futile.options 1.0.1 r40h6115d3f_1002
        - r-gclus 1.3.2 r40h6115d3f_2
        - r-gdata 2.18.0 r40h6115d3f_1003
        - r-generics 0.1.0 r40hc72bb7e_0
        - r-ggplot2 3.3.2 r40h6115d3f_0
        - r-ggvis 0.4.6 r40h142f84f_0
        - r-glue 1.4.2 r40hcdcec82_0
        - r-gplots 3.1.0 r40h6115d3f_0
        - r-gridextra 2.3 r40h6115d3f_1003
        - r-gtable 0.3.0 r40h6115d3f_3
        - r-gtools 3.8.2 r40hcdcec82_1
        - r-heatmaply 1.1.1 r40h6115d3f_0
        - r-hexbin 1.28.1 r40h31ca83e_2
        - r-highr 0.8 r40h6115d3f_2
        - r-htmltools 0.5.0 r40h0357c0b_0
        - r-htmlwidgets 1.5.2 r40h142f84f_0
        - r-httpuv 1.5.4 r40h0357c0b_0
        - r-httr 1.4.2 r40h6115d3f_0
        - r-isoband 0.2.2 r40h0357c0b_0
        - r-iterators 1.0.13 r40h142f84f_0
        - r-jsonlite 1.7.1 r40hcdcec82_0
        - r-kernsmooth 2.23_18 r40h7679c2e_0
        - r-knitr 1.30 r40h6115d3f_0
        - r-labeling 0.4.2 r40h142f84f_0
        - r-lambda.r 1.2.4 r40h6115d3f_1
        - r-later 1.1.0.1 r40h0357c0b_0
        - r-lattice 0.20_41 r40hcdcec82_2
        - r-lazyeval 0.2.2 r40hcdcec82_2
        - r-lifecycle 0.2.0 r40h6115d3f_1
        - r-locfit 1.5_9.4 r40hcdcec82_1
        - r-magrittr 1.5 r40h6115d3f_1003
        - r-markdown 1.1 r40hcdcec82_1
        - r-mass 7.3_53 r40hcdcec82_0
        - r-matrix 1.2_18 r40h7fa42b6_3
        - r-matrixmodels 0.4_1 r40h6115d3f_1003
        - r-matrixstats 0.57.0 r40hcdcec82_0
        - r-mcmc 0.9_7 r40h516909a_1
        - r-mcmcpack 1.4_9 r40h0357c0b_0
        - r-memoise 1.1.0 r40h6115d3f_1004
        - r-mgcv 1.8_33 r40h7fa42b6_0
        - r-mime 0.9 r40hcdcec82_1
        - r-moments 0.14 r40_1003
        - r-munsell 0.5.0 r40h6115d3f_1003
        - r-nlme 3.1_150 r40h31ca83e_0
        - r-openssl 1.4.3 r40he5c4762_0
        - r-pander 0.6.3 r40h0357c0b_2
        - r-pillar 1.4.6 r40h6115d3f_0
        - r-pkgbuild 1.1.0 r40h6115d3f_0
        - r-pkgconfig 2.0.3 r40h6115d3f_1
        - r-pkgload 1.1.0 r40h0357c0b_0
        - r-plogr 0.2.0 r40h6115d3f_1003
        - r-plotly 4.9.2.1 r40h6115d3f_1
        - r-plyr 1.8.6 r40h0357c0b_1
        - r-praise 1.0.0 r40h6115d3f_1004
        - r-prettyunits 1.1.1 r40h6115d3f_1
        - r-processx 3.4.4 r40hcdcec82_0
        - r-promises 1.1.1 r40h0357c0b_0
        - r-ps 1.4.0 r40h0eb13af_0
        - r-purrr 0.3.4 r40hcdcec82_1
        - r-qap 0.1_1 r40h31ca83e_1006
        - r-quantreg 5.75 r40hc3f0d1c_0
        - r-r6 2.5.0 r40hc72bb7e_0
        - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
        - r-rcpp 1.0.4.6 r40h0357c0b_1
        - r-rcpparmadillo 0.10.1.0.0 r40h87dd93f_0
        - r-registry 0.5_1 r40h6115d3f_2
        - r-reshape2 1.4.4 r40h0357c0b_1
        - r-rlang 0.4.7 r40hcdcec82_0
        - r-rmarkdown 2.5 r40h142f84f_0
        - r-rprojroot 1.3_2 r40h6115d3f_1003
        - r-rsqlite 2.2.1 r40h1b71b39_0
        - r-rstudioapi 0.11 r40h6115d3f_1
        - r-scales 1.1.1 r40h6115d3f_0
        - r-seriation 1.2_9 r40h31ca83e_1
        - r-shiny 1.5.0 r40h6115d3f_0
        - r-snow 0.4_3 r40h6115d3f_1002
        - r-sourcetools 0.1.7 r40he1b5a44_1002
        - r-sparsem 1.78 r40h31ca83e_2
        - r-stringi 1.5.3 r40h604b29c_0
        - r-stringr 1.4.0 r40h6115d3f_2
        - r-survival 3.2_7 r40hcdcec82_0
        - r-sys 3.4 r40hcdcec82_0
        - r-testthat 2.3.2 r40h0357c0b_1
        - r-tibble 3.0.4 r40h0eb13af_0
        - r-tidyr 1.1.2 r40h0357c0b_0
        - r-tidyselect 1.1.0 r40h6115d3f_0
        - r-tinytex 0.26 r40h6115d3f_0
        - r-tsp 1.1_10 r40hcdcec82_1
        - r-utf8 1.1.4 r40hcdcec82_1003
        - r-vctrs 0.3.4 r40hcdcec82_0
        - r-viridis 0.5.1 r40h6115d3f_1004
        - r-viridislite 0.3.0 r40h6115d3f_1003
        - r-webshot 0.5.2 r40h6115d3f_1
        - r-withr 2.3.0 r40h6115d3f_0
        - r-xfun 0.19 r40h9e2df91_0
        - r-xml 3.99_0.3 r40hcdcec82_1
        - r-xtable 1.8_4 r40h6115d3f_3
        - r-yaml 2.2.1 r40hcdcec82_1
        - r-zeallot 0.1.0 r40h6115d3f_1002
        - readline 8.0 he28a2e2_2
        - sed 4.8 hbfbb72e_0
        - sysroot_linux-64 2.12 h77966d4_13
        - tk 8.6.10 hed695b0_1
        - tktable 2.10 h555a92e_3
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.12 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.5 h516909a_1
        - zlib 1.2.11 h516909a_1010
        - zstd 1.4.5 h6597ccf_2
    run:
        - bioconductor-limma >=3.46.0,<3.47.0
        - bioconductor-sva >=3.38.0,<3.39.0
        - pandoc
        - r-base >=4.0,<4.1.0a0
        - r-corpcor
        - r-ggvis
        - r-gplots
        - r-heatmaply
        - r-knitr
        - r-matrix
        - r-matrixstats
        - r-mcmcpack
        - r-moments
        - r-pander
        - r-reshape2
        - r-rmarkdown
        - r-shiny
test:
    commands:
        - $R -e "library('BatchQC')"
about:
    description: 'Sequencing and microarray samples often are collected or processed
        in multiple batches or at different times. This often produces technical biases
        that can lead to incorrect results in the downstream analysis. BatchQC is
        a software tool that streamlines batch preprocessing and evaluation by providing
        interactive diagnostics, visualizations, and statistical analyses to explore
        the extent to which batch variation impacts the data. BatchQC diagnostics
        help determine whether batch adjustment needs to be done, and how correction
        should be applied before proceeding with a downstream analysis. Moreover,
        BatchQC interactively applies multiple common batch effect approaches to the
        data, and the user can quickly see the benefits of each method. BatchQC is
        developed as a Shiny App. The output is organized into multiple tabs, and
        each tab features an important part of the batch effect analysis and visualization
        of the data. The BatchQC interface has the following analysis groups: Summary,
        Differential Expression, Median Correlations, Heatmaps, Circular Dendrogram,
        PCA Analysis, Shape, ComBat and SVA.'
    home: https://bioconductor.org/packages/3.12/bioc/html/BatchQC.html
    license: GPL (>= 2)
    license_file: /opt/conda/conda-bld/bioconductor-batchqc_1604163309193/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/share/licenses/GPL-3
    summary: Batch Effects Quality Control Software
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:batchqc
