Changes in version 1.3.0 (Release date: 2020-09-24)
+ Updated the required version of dependencies
+ Added flag for plot peaks courtesy of John Bouranis

Changes in version 1.1.4 (Release date: 2020-0x-xx)
+ Introduced warnings and errors regarding mass threshold parameter for users with dense data
  o Warning first determines if over 75% of the detected binned regions of interest are below the ppm error.
  o New flag is returned within the S/N threshold estimation step to show that no bins made it past this step.
  o Added if statements to handle different file structure within wiff files. 

Changes in version 1.1.2
+ Updated ploting function of DKE to make it easier to evaluate the results.
  o Added a new xlim filter to DKE ploting function
  o Added some flags to check for file types while using AutoTuner

Changes in version 0.99.9 (Release date: 2019-08-06)
+ Added changes to satisfy second round of bioc review
  o Fixed source path for mzDb data object
  o Removed redundant table of contents
  o Removed non used redundant data object eicParamEsts.rds

Changes in version 0.99.8 (Release date: 2019-08-02)
+ Added changes to fix warnings
  o Replaced class == to is().
  o Added corrections to dependencies regarding xcms.

Changes in version 0.99.7 (Release date: 2019-08-02)
+ Introduced changes as part of bioconductor review process.
  o Added Author info to vignette.
  o Added installation instructions for package.
  o Removed mention of mmetspData in favor of test data package mtbls2.
  o Added table of contents to vignette.
  o Removed png within vignette folder that was not being used. 
  o Changed dimensions of image returned from TIC plot in vignette.
  o Removed "-" from documentation.
  o Fixed source paths on files using internal data for examples
  o Removed peak_table and peak_difference from data/ dir
  o Added documentation for eicParamsEsts object used in testing
  o swapped sapplys for vapplys
  o switched 1:.. to seq_len or seq_along
  o Added and implemented accessor and setter functions for Autotuner slots
  o Added unit tests for accessor functions. 

Changes in version 1.0.1 (Release date: 2019-07-06)
+ Added DOI to cite code through zenodo. 

Changes in version 1.0.0 (Release date: 2019-07-06)
+ Introduced first official release of AutoTuner. 
