# Automated parameter selection for untargeted metabolomics data processing

## Documentation for package ‘Autotuner’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

Autotuner | Autotuner
Autotuner-class | Autotuner
checkBounds | checkBounds
checkEICPeaks | checkEICPeaks
createAutotuner | createAutotuner
dissectScans | dissectScans
EICparams | EICparams
eicParamsEsts | eicParamsEsts
estimatePPM | estimatePPM
estimateSNThresh | estimateSNThresh
extract_peaks | extract_peaks
filterPeaksfromNoise | filterPeaksfromNoise
filterPpmError | filterPpmError
findPeakWidth | findPeakWidth
findTruePeaks | findTruePeaks
getAutoFactorCol | getAutoFactorCol
getAutoFile_col | getAutoFile_col
getAutoFile_paths | getAutoFile_paths
getAutoIntensity | getAutoIntensity
getAutoMetadata | getAutoMetadata
getAutoPeaks | getAutoPeaks
getAutoPeak_difference | getAutoPeak_difference
getAutoPeak_table | getAutoPeak_table
getAutoTime | getAutoTime
initialize-method | Update an 'Autotuner' object
isolatePeaks | isolatePeaks
mzDb | mzDb
observedPeak | observedPeak
peakwidth_est | peakwidth_est
peakwidth_table | peakwidth_table
peak_time_difference | peak_time_difference
plot_peaks | @title plot_peaks
plot_signals | plot_signals
returnParams | returnParams
setAutoFactorCol | setAutoFactorCol
setAutoFile_col | setAutoFile_col
setAutoFile_paths | setAutoFile_paths
setAutoIntensity | setAutoIntensity
setAutoMetadata | setAutoMetadata
setAutoPeaks | setAutoPeaks
setAutoPeak_difference | setAutoPeak_difference
setAutoPeak_table | setAutoPeak_table
setAutoTime | setAutoTime
ThresholdingAlgo | ThresholdingAlgo
TIC_params | TIC_params