Package: autonomics
Type: Package
Title: Generifying and intuifying cross-platform omics analysis
Version: 1.2.0
Authors@R: c(person("Aditya",   "Bhagwat",   email = "aditya.bhagwat@mpi-bn.mpg.de",    role = c("aut", "cre")), 
             person("Shahina",  "Hayat",     email = "shh2026@qatar-med.cornell.edu",   role = "aut"), 
             person("Anna",     "Halama",    email = "amh2025@qatar-med.cornell.edu",   role = "ctb"), 
             person("Richard",  "Cotton",    email = "richierocks@gmail.com",           role = "ctb"),
             person("Laure",    "Cougnaud",  email = "laure.cougnaud@openanalytics.eu", role = "ctb"),
             person("Rudolf",   "Engelke",   email = "rue2006@qatar-med.cornell.edu",   role = "ctb"),
             person("Hinrich",  "Goehlmann", email = "hinrich@goehlmann.info",          role = "sad"),
             person("Karsten",  "Suhre",     email = "kas2049@qatar-med.cornell.edu",   role = "sad"),
             person("Johannes", "Graumann",  email = "johannes.graumann@mpi-bn.mpg.de", role = c('aut', 'sad', 'rth')))
Description: 
  This package offers a generic and intuitive solution for cross-platform omics data analysis.
  It has functions for import, preprocessing, exploration, contrast analysis and visualization of omics data.
  It follows a tidy, functional programming paradigm.
License: GPL-3
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: DataImport, DimensionReduction, GeneExpression,
        MassSpectrometry, Preprocessing, PrincipalComponent, RNASeq,
        Software, Transcription
BugReports: https://bitbucket.org/graumannlabtools/autonomics
URL: https://github.com/bhagwataditya/autonomics
RoxygenNote: 7.1.1
Depends: R (>= 4.0)
Imports: abind, assertive, BiocFileCache, BiocGenerics, colorspace,
        data.table, edgeR, ggplot2, ggrepel, graphics, grDevices, grid,
        gridExtra, limma, magrittr, matrixStats, methods,
        MultiAssayExperiment, parallel, pcaMethods, rappdirs, rlang,
        R.utils, readxl, S4Vectors, scales, stats, stringi,
        SummarizedExperiment, tidyr, tools, utils
Suggests: affy, AnnotationDbi, BiocManager, diagram, GenomicRanges,
        GEOquery, hgu95av2.db, ICSNP, knitr, lme4, lmerTest, MASS,
        mixOmics, mpm, nlme, org.Hs.eg.db, org.Mm.eg.db, RCurl,
        remotes, rmarkdown, ropls, Rsubread, rtracklayer, seqinr,
        statmod, testthat
git_url: https://git.bioconductor.org/packages/autonomics
git_branch: RELEASE_3_14
git_last_commit: f775f33
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-26 20:53:33 UTC; biocbuild
Author: Aditya Bhagwat [aut, cre],
  Shahina Hayat [aut],
  Anna Halama [ctb],
  Richard Cotton [ctb],
  Laure Cougnaud [ctb],
  Rudolf Engelke [ctb],
  Hinrich Goehlmann [sad],
  Karsten Suhre [sad],
  Johannes Graumann [aut, sad, rth]
Maintainer: Aditya Bhagwat <aditya.bhagwat@mpi-bn.mpg.de>
Built: R 4.1.1; ; 2021-11-03 17:20:22 UTC; unix
