# Generated by roxygen2: do not edit by hand

export(AUCell_assignCells)
export(AUCell_buildRankings)
export(AUCell_calcAUC)
export(AUCell_createViewerApp)
export(AUCell_exploreThresholds)
export(AUCell_plotHist)
export(AUCell_plotTSNE)
export(AUCell_run)
export(aucellResults)
export(getAUC)
export(getAssignments)
export(getRanking)
export(getSetNames)
export(getThresholdSelected)
export(nGenes)
export(orderAUC)
export(plotEmb_rgb)
export(plotGeneCount)
export(plotTsne_cellProps)
export(setGeneSetNames)
export(subsetGeneSets)
export(updateAucellResults)
exportMethods(cbind)
exportMethods(getAUC)
exportMethods(getRanking)
exportMethods(rbind)
import(GSEABase)
import(data.table, except = shift)
import(shiny)
importClassesFrom(DelayedArray,DelayedArray)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(BiocGenerics,cbind)
importFrom(BiocGenerics,rbind)
importFrom(DelayedArray,DelayedArray)
importFrom(DelayedArray,blockApply)
importFrom(DelayedArray,colAutoGrid)
importFrom(DelayedMatrixStats,colRanks)
importFrom(R.utils,capitalize)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,dev.off)
importFrom(grDevices,png)
importFrom(grDevices,rainbow)
importFrom(graphics,abline)
importFrom(graphics,box)
importFrom(graphics,boxplot)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(methods,is)
importFrom(methods,new)
importFrom(stats,as.dist)
importFrom(stats,cor)
importFrom(stats,density)
importFrom(stats,dnorm)
importFrom(stats,hclust)
importFrom(stats,ks.test)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(utils,capture.output)
importFrom(utils,head)
importFrom(utils,installed.packages)
importMethodsFrom(SummarizedExperiment,assay)
importMethodsFrom(SummarizedExperiment,assayNames)
importMethodsFrom(SummarizedExperiment,assays)
