# Analysis of Transposable Elements

## Documentation for package ‘atena’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

atena-package | atena: analysis of transposable elements in R and Bioconductor
atena | atena: analysis of transposable elements in R and Bioconductor
AtenaParam-class | Atena parameter class
ERVmapParam | ERVmap parameter class
ERVmapParam-class | ERVmap parameter class
features | Atena parameter class
features-method | Atena parameter class
ovIntersectionStrict | Pre-defined overlapping mode functions
ovUnion | Pre-defined overlapping mode functions
path-method | Atena parameter class
qtex | Quantify transposable element expression
qtex-method | Quantify transposable element expression
show-method | ERVmap parameter class
show-method | TEtranscripts parameter class
show-method | Telescope parameter class
TelescopeParam | Telescope parameter class
TelescopeParam-class | Telescope parameter class
TEtranscriptsParam | TEtranscripts parameter class
TEtranscriptsParam-class | TEtranscripts parameter class