ATACseqTFEA-package	ATACseqTFEA-package
$,TFEAresults-method	TFEAresults-methods
$<-,TFEAresults-method	TFEAresults-methods
as,TFEAresults,data.frame-method	TFEAresults-methods
ATACseqTFEA	ATACseqTFEA-package
calWeights	calWeights
cluster_PWMs	extdata
coerce,TFEAresults,data.frame-method	TFEAresults-methods
count5ends	count5ends
countsNormalization	countsNormalization
DBscore	DBscore
doTFEA	doTFEA
ESvolcanoplot	ESvolcanoplot
eventsFilter	eventsFilter
expandBindingSites	expandBindingSites
extdata	extdata
getBindingSites	TFEAresults-methods
getBindingSites,TFEAresults-method	TFEAresults-methods
getEnrichmentScore	TFEAresults-methods
getEnrichmentScore,TFEAresults-method	TFEAresults-methods
getMotifID	TFEAresults-methods
getMotifID,TFEAresults-method	TFEAresults-methods
getWeightedBindingScore	getWeightedBindingScore
plotES	plotES
prepareBindingSites	prepareBindingSites
PWMatrixList	extdata
reduceByPercentage	reduceByPercentage
show,TFEAresults-method	TFEAresults-methods
TFEA	TFEA
TFEAresults	TFEAresults-class
TFEAresults-class	TFEAresults-class
TFEAresults-methods	TFEAresults-methods
[[,TFEAresults,ANY,ANY-method	TFEAresults-methods
[[<-,TFEAresults,ANY,ANY-method	TFEAresults-methods
