# Automatic Statistical Identification in Complex Spectra

## Documentation for package ‘ASICS’ version 2.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

accessors-methods | Accessors
alignSpectra | Alignment
AnalysisResults-class | Class AnalysisResults
ASICS | Automatic Statistical Identification in Complex Spectra
ASICSResults-class | Class ASICSResults
ASICSUsersGuide | View ASICS User's Guide
binning | Binning/Bucketing of NMR spectra
c-method | Combine or subset functions
c.ASICSResults | Combine or subset functions
c.PureLibrary | Combine or subset functions
c.Spectra | Combine or subset functions
combineAndSubset-methods | Combine or subset functions
createPureLibrary | Create a pure library
createSpectra | Create a Spectra object
dim-method | Summary methods
dim.Spectra | Summary methods
formatForAnalysis | Format data for analysis
getBestModel | Accessors
getBestModel-method | Accessors
getCVError | Accessors
getCVError-method | Accessors
getDataset | Accessors
getDataset-method | Accessors
getDeformedLibrary | Accessors
getDeformedLibrary-method | Accessors
getMeanByGroup | Accessors
getMeanByGroup-method | Accessors
getNbProtons | Accessors
getNbProtons-method | Accessors
getNormMethod | Accessors
getNormMethod-method | Accessors
getNormParams | Accessors
getNormParams-method | Accessors
getPpmGrid | Accessors
getPpmGrid-method | Accessors
getQuantification | Accessors
getQuantification-method | Accessors
getReconstructedSpectra | Accessors
getReconstructedSpectra-method | Accessors
getResults | Accessors
getResults-method | Accessors
getSampleName | Accessors
getSampleName-method | Accessors
getSpectra | Accessors
getSpectra-method | Accessors
getTypeAnalysis | Accessors
getTypeAnalysis-method | Accessors
getTypeData | Accessors
getTypeData-method | Accessors
importSpectra | Import metabolomic spectra
importSpectraBruker | Import preprocessed metabolomic spectra from Bruker files
kruskalWallis | Kruskal-Wallis rank sum tests on a 'SummarizedExperiment' object
length-method | Summary methods
length.Spectra | Summary methods
normaliseSpectra | Normalisation
oplsda | Orthogonal projections to latent structures discriminant analysis (OPLS-DA) on a 'SummarizedExperiment' object
pca | Principal Component Analysis (PCA) on a 'SummarizedExperiment' object
plot-method | Visualisation methods
plot-method | Visualisation methods
plot.AnalysisResults | Visualisation methods
plot.ASICSResults | Visualisation methods
plot.Spectra | Visualisation methods
plotAlignment | Tile plot
PureLibrary-class | Class 'PureLibrary'
pure_library | Pure spectra library
show-method | Summary methods
show.AnalysisResults | Summary methods
show.ASICSResults | Summary methods
show.Spectra | Summary methods
Spectra-class | Class Spectra
summary-method | Summary methods
summary-methods | Summary methods
summary.AnalysisResults | Summary methods
summary.Spectra | Summary methods
visualisation-methods-analyses | Visualisation methods
visualisation-methods-spectra | Visualisation methods
[-method | Combine or subset functions
[.ASICSResults | Combine or subset functions
[.PureLibrary | Combine or subset functions
[.Spectra | Combine or subset functions