Package: annmap
Type: Package
Title: Genome annotation and visualisation package pertaining to
        Affymetrix arrays and NGS analysis.
Description: annmap provides annotation mappings for Affymetrix exon
        arrays and coordinate based queries to support deep sequencing
        data analysis. Database access is hidden behind the API which
        provides a set of functions such as genesInRange(),
        geneToExon(), exonDetails(), etc. Functions to plot gene
        architecture and BAM file data are also provided. Underlying
        data are from Ensembl.
Version: 1.24.0
Date: 2011-09-14
Author: Tim Yates <Tim.Yates@cruk.manchester.ac.uk>
Maintainer: Chris Wirth <Christopher.Wirth@cruk.manchester.ac.uk>
Depends: R (>= 2.15.0), methods, GenomicRanges
Imports: DBI, RMySQL (>= 0.6-0), digest, Biobase, grid, lattice,
        Rsamtools, genefilter, IRanges, BiocGenerics
Suggests: RUnit, rjson, Gviz
License: GPL-2
URL: http://annmap.cruk.manchester.ac.uk
Collate: zzz.R db.R utils.R cache.R statements.R filtering.R utr.R
        coords.R ws.R plot.genomic.R plot.ngs.R si.R
biocViews: Annotation, Microarray, OneChannel, ReportWriting,
        Transcription, Visualization
git_url: https://git.bioconductor.org/packages/annmap
git_branch: RELEASE_3_8
git_last_commit: 97425ca
git_last_commit_date: 2018-10-30
Date/Publication: 2018-10-30
NeedsCompilation: no
Packaged: 2018-10-30 23:36:53 UTC; biocbuild
Built: R 3.5.1; ; 2019-01-03 04:40:00 UTC; unix
