# AnaLysis routines for ePigenomicS data

## Documentation for package ‘ALPS’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

get_genomic_annotations | Annotate genomic regions
get_variable_regions | Get variable regions
merge_GR | Merge genomic regions
multiBigwig_summary | Enrichments at genomics regions
plot_browser_tracks | UCSC Genome browser like plots
plot_correlation | Correlations among replicates/groups
plot_enrichments | Enrichment plots
plot_genomic_annotations | Plot genomic annotations
plot_motif_logo | Plot sequence motifs
process_homer | Process homer format
process_jaspar | Process jaspar format
process_meme | Process meme format
process_pfm | Process PFM format
process_transfac | Process transfac format